AutismKB 2.0

Annotation Detail for KLF13


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Basic Information Top
Gene Symbol:KLF13 ( BTEB3,FKLF2,NSLP1,RFLAT-1,RFLAT1 )
Gene Full Name: Kruppel-like factor 13
Band: 15q13.3
Quick LinksEntrez ID:51621; OMIM: 605328; Uniprot ID:KLF13_HUMAN; ENSEMBL ID: ENSG00000169926; HGNC ID: 13672
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst3 / 6231948
fetus20 / 56401235
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult56 / 193912128
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma5 / 17475286
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma6 / 8282372
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor10 / 11936983
germ cell tumor9 / 26384534
glioma13 / 106883121
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia20 / 95842208
liver tumor2 / 9635920
lung tumor10 / 10312796
lymphoma7 / 7175597
non-neoplasia0 / 972500 
normal87 / 336030725
ovarian tumor0 / 766820 
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder3 / 29757100
blood4 / 12347832
bone3 / 7165541
bone marrow3 / 4880161
brain32 / 110098929
cervix0 / 481710 
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye1 / 2110544
heart6 / 8962666
intestine14 / 23447259
kidney10 / 21177747
larynx0 / 241450 
liver2 / 2077439
lung19 / 33697456
lymph7 / 44270158
lymph node18 / 91610196
mammary gland7 / 15327145
mouth4 / 6705259
muscle4 / 10771537
nerve1 / 1576863
ovary0 / 1020510 
pancreas11 / 21481251
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate2 / 18934510
salivary gland0 / 201550 
skin10 / 21057447
spleen1 / 5395218
stomach20 / 96619206
testis1 / 3304423
thymus6 / 8113173
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus9 / 23287838
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219878_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts20.95
Adipocyte13
AdrenalCortex4.95
Adrenalgland4
Amygdala6.6
Appendix4.8
AtrioventricularNode3.8
BDCA4+_DentriticCells83.1
Bonemarrow7.5
BronchialEpithelialCells4.65
CD105+_Endothelial20.35
CD14+_Monocytes49.6
CD19+_BCells(neg._sel.)38.3
CD33+_Myeloid32.2
CD34+5.95
CD4+_Tcells93.55
CD56+_NKCells126.3
CD71+_EarlyErythroid139.7
CD8+_Tcells85.25
CardiacMyocytes6.2
Caudatenucleus4.45
Cerebellum4.6
CerebellumPeduncles6.7
CiliaryGanglion3.4
CingulateCortex14.45
Colorectaladenocarcinoma4.7
DorsalRootGanglion3.8
FetalThyroid4.7
Fetalbrain4.6
Fetalliver4.25
Fetallung3.75
GlobusPallidus3.5
Heart6.5
Hypothalamus5
Kidney3.9
Leukemia_chronicMyelogenousK-5624.2
Leukemia_promyelocytic-HL-604.05
Leukemialymphoblastic(MOLT-4)3.75
Liver6.65
Lung21.1
Lymphnode4.05
Lymphoma_burkitts(Daudi)6
Lymphoma_burkitts(Raji)13.55
MedullaOblongata4.3
OccipitalLobe4.8
OlfactoryBulb3.75
Ovary3.1
Pancreas3.8
PancreaticIslet4.95
ParietalLobe5.1
Pituitary5.55
Placenta5.85
Pons4.6
PrefrontalCortex5.8
Prostate5.55
Salivarygland3.8
SkeletalMuscle5.9
Skin3.7
SmoothMuscle5.4
Spinalcord5.1
SubthalamicNucleus4.3
SuperiorCervicalGanglion5.4
TemporalLobe4.35
Testis4.05
TestisGermCell3.9
TestisIntersitial3.95
TestisLeydigCell4.65
TestisSeminiferousTubule4.1
Thalamus4.7
Thymus18.35
Thyroid6.05
Tongue4.65
Tonsil4.65
Trachea3.95
TrigeminalGanglion4.95
Uterus3.85
UterusCorpus4.25
WholeBlood10.45
Wholebrain4.85
colon4.85
pineal_day5.76
pineal_night5.66
retina5.825
small_intestine6.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P413150
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.79 ± 0.32
Basal Forebrain6.51 ± 0.25
Basal Part of Pons6.82 ± 0.38
Cerebellar Cortex7.14 ± 0.28
Cerebellar Nuclei6.46 ± 0.4
Claustrum6.65 ± 0.4
Epithalamus6.53 ± 0.42
Frontal Lobe6.66 ± 0.39
Globus Pallidus6.38 ± 0.22
Hypothalamus6.05 ± 0.27
Insula6.67 ± 0.46
Limbic Lobe6.85 ± 0.42
Mesencephalon6.53 ± 0.37
Myelencephalon6.74 ± 0.39
Occipital Lobe7.15 ± 0.44
Parietal Lobe6.75 ± 0.27
Pontine Tegmentum6.66 ± 0.41
Striatum6.43 ± 0.29
Subthalamus6.3 ± 0.18
Temporal Lobe6.85 ± 0.31
Thalamus6.8 ± 0.36
White Matter7.61 ± 0.21
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Klf13CBCerebellum11.38
12.9
Klf13CTXCerebral cortex12.79
10.8
Klf13HIPHippocampal region28.04
46.59
Klf13HPFHippocampal formation23.01
32.77
Klf13HYHypothalamus1.5
1.43
Klf13LSXLateral septal complex6.59
6.16
Klf13MBMidbrain1.92
1.98
Klf13MYMedulla5.25
6.66
Klf13OLFOlfactory bulb15.66
14.11
Klf13PPons2.72
3.38
Klf13PALPallidum1.75
1.7
Klf13RHPRetrohippocampal region12.35
10.86
Klf13sAMYStriatum-like amygdalar nuclei2.8
2.36
Klf13STRStriatum3.45
3.04
Klf13STRdStriatum dorsal region3.75
3.45
Klf13STRvStriatum ventral region1.44
0.93
Klf13THThalamus5.26
5.95
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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