Annotation Detail for SLC25A39
Basic Information Top
| Gene Symbol: | SLC25A39 ( CGI69,FLJ22407 ) |
|---|---|
| Gene Full Name: | solute carrier family 25, member 39 |
| Band: | 17q21.31 |
| Quick Links | Entrez ID:51629; OMIM: 610820; Uniprot ID:S2539_HUMAN; ENSEMBL ID: ENSG00000013306; HGNC ID: 24279 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.514216
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 9 / 62319 | 144 | |
| fetus | 56 / 564012 | 99 | |
| neonate | 1 / 31097 | 32 |  |
| infant | 14 / 23620 | 592 |  |
| juvenile | 11 / 55556 | 197 | |
| adult | 284 / 1939121 | 146 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 6 / 17475 | 343 | |
| breast (mammary gland) tumor | 26 / 94178 | 276 | |
| cervical tumor | 13 / 34366 | 378 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 25 / 114246 | 218 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 62 / 119369 | 519 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 16 / 106883 | 149 | |
| head and neck tumor | 18 / 136302 | 132 | |
| kidney tumor | 25 / 68959 | 362 | |
| leukemia | 25 / 95842 | 260 | |
| liver tumor | 29 / 96359 | 300 | |
| lung tumor | 56 / 103127 | 543 | |
| lymphoma | 8 / 71755 | 111 | |
| non-neoplasia | 10 / 97250 | 102 | |
| normal | 352 / 3360307 | 104 | |
| ovarian tumor | 18 / 76682 | 234 | |
| pancreatic tumor | 21 / 104616 | 200 | |
| primitive neuroectodermal tumor of the CNS | 77 / 125680 | 612 | |
| prostate cancer | 27 / 102680 | 262 | |
| retinoblastoma | 18 / 46356 | 388 | |
| skin tumor | 41 / 124949 | 328 | |
| soft tissue/muscle tissue tumor | 30 / 125191 | 239 | |
| uterine tumor | 14 / 90257 | 155 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 45 / 40015 | 1124 |  |
| bladder | 5 / 29757 | 168 | |
| blood | 36 / 123478 | 291 | |
| bone | 9 / 71655 | 125 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 121 / 1100989 | 109 | |
| cervix | 20 / 48171 | 415 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 25 / 215722 | 115 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 43 / 211054 | 203 | |
| heart | 5 / 89626 | 55 | |
| intestine | 36 / 234472 | 153 | |
| kidney | 48 / 211777 | 226 | |
| larynx | 1 / 24145 | 41 | |
| liver | 37 / 207743 | 178 | |
| lung | 79 / 336974 | 234 | |
| lymph | 4 / 44270 | 90 | |
| lymph node | 17 / 91610 | 185 | |
| mammary gland | 32 / 153271 | 208 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 23 / 102051 | 225 | |
| pancreas | 34 / 214812 | 158 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 3 / 41328 | 72 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 41 / 280825 | 145 | |
| prostate | 33 / 189345 | 174 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 54 / 210574 | 256 | |
| spleen | 12 / 53952 | 222 | |
| stomach | 15 / 96619 | 155 | |
| testis | 34 / 330442 | 102 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 12 / 47473 | 252 | |
| tonsil | 4 / 16999 | 235 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 44 / 232878 | 188 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_9504_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.45 ± 0.67 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.93 ± 0.49 | |
| Basal Part of Pons | 4.96 ± 0.66 | |
| Cerebellar Cortex | 5.04 ± 0.63 | |
| Cerebellar Nuclei | 4.7 ± 0.48 | |
| Claustrum | 4.17 ± 1.01 | |
| Epithalamus | 5.33 ± 0.73 | |
| Frontal Lobe | 5.02 ± 0.58 | |
| Globus Pallidus | 4.91 ± 0.54 | |
| Hypothalamus | 4.99 ± 0.78 | |
| Insula | 4.9 ± 0.73 | |
| Limbic Lobe | 4.56 ± 0.66 | |
| Mesencephalon | 4.94 ± 0.64 | |
| Myelencephalon | 4.9 ± 0.65 | |
| Occipital Lobe | 4.39 ± 0.75 | |
| Parietal Lobe | 4.83 ± 0.58 | |
| Pontine Tegmentum | 4.87 ± 0.63 | |
| Striatum | 4.63 ± 0.68 | |
| Subthalamus | 5.37 ± 0.51 | |
| Temporal Lobe | 5.02 ± 0.58 | |
| Thalamus | 5.07 ± 0.59 | |
| White Matter | 5.29 ± 0.18 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D11Ertd333e | CB | Cerebellum | 18.72 | |
| 21.16 | | |||
| D11Ertd333e | CTX | Cerebral cortex | 29.51 | |
| 21.92 | | |||
| D11Ertd333e | HIP | Hippocampal region | 20.02 | |
| 20.15 | | |||
| D11Ertd333e | HPF | Hippocampal formation | 22.24 | |
| 19.81 | | |||
| D11Ertd333e | HY | Hypothalamus | 25.46 | |
| 21.19 | | |||
| D11Ertd333e | LSX | Lateral septal complex | 8.73 | |
| 5.9 | | |||
| D11Ertd333e | MB | Midbrain | 31.02 | |
| 30.12 | | |||
| D11Ertd333e | MY | Medulla | 43.75 | |
| 52.15 | | |||
| D11Ertd333e | OLF | Olfactory bulb | 24.17 | |
| 19.55 | | |||
| D11Ertd333e | P | Pons | 35.31 | |
| 40.38 | | |||
| D11Ertd333e | PAL | Pallidum | 26.83 | |
| 25.96 | | |||
| D11Ertd333e | RHP | Retrohippocampal region | 26.67 | |
| 19.7 | | |||
| D11Ertd333e | sAMY | Striatum-like amygdalar nuclei | 3.22 | |
| 2.42 | | |||
| D11Ertd333e | STR | Striatum | 8.08 | |
| 6.34 | | |||
| D11Ertd333e | STRd | Striatum dorsal region | 6.8 | |
| 5.62 | | |||
| D11Ertd333e | STRv | Striatum ventral region | 13.77 | |
| 9.8 | | |||
| D11Ertd333e | TH | Thalamus | 31.3 | |
| 27.46 | |