Annotation Detail for NUB1
Basic Information Top
| Gene Symbol: | NUB1 ( BS4,NUB1L,NYREN18 ) |
|---|---|
| Gene Full Name: | negative regulator of ubiquitin-like proteins 1 |
| Band: | 7q36.1 |
| Quick Links | Entrez ID:51667; OMIM: 607981; Uniprot ID:NUB1_HUMAN; ENSEMBL ID: ENSG00000013374; HGNC ID: 17623 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.647082
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 31 / 564012 | 54 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 161 / 1939121 | 83 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 2 / 12794 | 156 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 10 / 94178 | 106 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 18 / 114246 | 157 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 8 / 119369 | 67 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 12 / 136302 | 88 | |
| kidney tumor | 2 / 68959 | 29 |  |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 173 / 3360307 | 51 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 13 / 125680 | 103 | |
| prostate cancer | 10 / 102680 | 97 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 50 / 1100989 | 45 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 19 / 215722 | 88 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 14 / 211054 | 66 | |
| heart | 2 / 89626 | 22 | |
| intestine | 26 / 234472 | 110 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 25 / 336974 | 74 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 14 / 153271 | 91 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 6 / 41328 | 145 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 10 / 96619 | 103 | |
| testis | 22 / 330442 | 66 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 22 / 232878 | 94 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_5731_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.2 ± 0.4 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.72 ± 0.21 | |
| Basal Part of Pons | 6.89 ± 0.32 | |
| Cerebellar Cortex | 6.85 ± 0.22 | |
| Cerebellar Nuclei | 7.16 ± 0.34 | |
| Claustrum | 6.36 ± 0.6 | |
| Epithalamus | 6.97 ± 0.41 | |
| Frontal Lobe | 6.57 ± 0.4 | |
| Globus Pallidus | 7.24 ± 0.2 | |
| Hypothalamus | 7.07 ± 0.26 | |
| Insula | 6.48 ± 0.42 | |
| Limbic Lobe | 6.39 ± 0.44 | |
| Mesencephalon | 6.71 ± 0.38 | |
| Myelencephalon | 6.66 ± 0.4 | |
| Occipital Lobe | 6.88 ± 0.31 | |
| Parietal Lobe | 6.75 ± 0.4 | |
| Pontine Tegmentum | 6.68 ± 0.34 | |
| Striatum | 6.15 ± 0.37 | |
| Subthalamus | 6.54 ± 0.88 | |
| Temporal Lobe | 6.6 ± 0.36 | |
| Thalamus | 6.81 ± 0.29 | |
| White Matter | 7.75 ± 0.13 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nub1 | CB | Cerebellum | 37.85 | |
| 46.88 | | |||
| Nub1 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Nub1 | HIP | Hippocampal region | 64.5 | |
| 100 | | |||
| Nub1 | HPF | Hippocampal formation | 87.32 | |
| 100 | | |||
| Nub1 | HY | Hypothalamus | 69.58 | |
| 64.32 | | |||
| Nub1 | LSX | Lateral septal complex | 68.1 | |
| 56.86 | | |||
| Nub1 | MB | Midbrain | 66.36 | |
| 66.55 | | |||
| Nub1 | MY | Medulla | 63.14 | |
| 74.88 | | |||
| Nub1 | OLF | Olfactory bulb | 93.38 | |
| 87.2 | | |||
| Nub1 | P | Pons | 53.18 | |
| 62.79 | | |||
| Nub1 | PAL | Pallidum | 58.38 | |
| 58.67 | | |||
| Nub1 | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| Nub1 | sAMY | Striatum-like amygdalar nuclei | 94.86 | |
| 82.26 | | |||
| Nub1 | STR | Striatum | 98.52 | |
| 83.2 | | |||
| Nub1 | STRd | Striatum dorsal region | 100 | |
| 89.05 | | |||
| Nub1 | STRv | Striatum ventral region | 87.88 | |
| 72.24 | | |||
| Nub1 | TH | Thalamus | 67.86 | |
| 62.71 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00039305 | 16 | 399 | 414 | ACDGNVDHAATHITNR | Peptide Atlas |