Annotation Detail for SELT
Basic Information Top
| Gene Symbol: | SELT ( - ) |
|---|---|
| Gene Full Name: | - |
| Band: | 3q25.1 |
| Quick Links | Entrez ID:51714; OMIM: 607912; Uniprot ID:SELT_HUMAN; ENSEMBL ID: ENSG00000198843; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.369052
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 12 / 70761 | 169 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 42 / 564012 | 74 | |
| neonate | 4 / 31097 | 128 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 7 / 55556 | 125 | |
| adult | 208 / 1939121 | 107 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 3 / 12794 | 234 |  |
| bladder carcinoma | 22 / 17475 | 1258 |  |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 16 / 119369 | 134 | |
| germ cell tumor | 68 / 263845 | 257 | |
| glioma | 13 / 106883 | 121 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 25 / 68959 | 362 | |
| leukemia | 51 / 95842 | 532 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 7 / 103127 | 67 | |
| lymphoma | 7 / 71755 | 97 | |
| non-neoplasia | 14 / 97250 | 143 | |
| normal | 457 / 3360307 | 135 | |
| ovarian tumor | 7 / 76682 | 91 | |
| pancreatic tumor | 18 / 104616 | 172 | |
| primitive neuroectodermal tumor of the CNS | 6 / 125680 | 47 | |
| prostate cancer | 14 / 102680 | 136 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 73 / 124949 | 584 | |
| soft tissue/muscle tissue tumor | 32 / 125191 | 255 | |
| uterine tumor | 12 / 90257 | 132 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 7 / 33197 | 210 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 22 / 29757 | 739 | |
| blood | 18 / 123478 | 145 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 43 / 48801 | 881 | |
| brain | 262 / 1100989 | 237 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 35 / 149255 | 234 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 22 / 215722 | 101 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 21 / 211054 | 99 | |
| heart | 5 / 89626 | 55 | |
| intestine | 16 / 234472 | 68 | |
| kidney | 41 / 211777 | 193 | |
| larynx | 0 / 24145 | 0 | |
| liver | 16 / 207743 | 77 | |
| lung | 34 / 336974 | 100 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 23 / 91610 | 251 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 10 / 107715 | 92 | |
| nerve | 4 / 15768 | 253 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 29 / 214812 | 135 | |
| parathyroid | 5 / 20539 | 243 | |
| pharynx | 11 / 41328 | 266 | |
| pituitary gland | 2 / 16585 | 120 | |
| placenta | 43 / 280825 | 153 | |
| prostate | 27 / 189345 | 142 | |
| salivary gland | 10 / 20155 | 496 | |
| skin | 87 / 210574 | 413 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 8 / 96619 | 82 | |
| testis | 94 / 330442 | 284 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 20 / 52413 | 381 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 25 / 232878 | 107 | |
| vascular | 8 / 51780 | 154 | |
Microarray in - Probe name: A_23_P250042
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.06 ± 0.22 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.16 ± 0.21 | |
| Basal Part of Pons | 8.15 ± 0.17 | |
| Cerebellar Cortex | 7.99 ± 0.24 | |
| Cerebellar Nuclei | 8.35 ± 0.23 | |
| Claustrum | 7.97 ± 0.3 | |
| Epithalamus | 8.42 ± 0.18 | |
| Frontal Lobe | 8.33 ± 0.28 | |
| Globus Pallidus | 8.31 ± 0.23 | |
| Hypothalamus | 8.63 ± 0.13 | |
| Insula | 8.36 ± 0.25 | |
| Limbic Lobe | 8.17 ± 0.31 | |
| Mesencephalon | 8.33 ± 0.27 | |
| Myelencephalon | 8.24 ± 0.28 | |
| Occipital Lobe | 8.02 ± 0.26 | |
| Parietal Lobe | 8.3 ± 0.26 | |
| Pontine Tegmentum | 8.24 ± 0.29 | |
| Striatum | 8.21 ± 0.3 | |
| Subthalamus | 8.46 ± 0.25 | |
| Temporal Lobe | 8.28 ± 0.24 | |
| Thalamus | 8.28 ± 0.21 | |
| White Matter | 8.77 ± 0.07 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2810407C02Rik | CB | Cerebellum | 25.38 | |
| 46.55 | | |||
| 2810407C02Rik | CTX | Cerebral cortex | 71.33 | |
| 61.59 | | |||
| 2810407C02Rik | HIP | Hippocampal region | 46.55 | |
| 75.71 | | |||
| 2810407C02Rik | HPF | Hippocampal formation | 61.21 | |
| 77.87 | | |||
| 2810407C02Rik | HY | Hypothalamus | 34.39 | |
| 30.68 | | |||
| 2810407C02Rik | LSX | Lateral septal complex | 16.85 | |
| 15.77 | | |||
| 2810407C02Rik | MB | Midbrain | 33.06 | |
| 34.53 | | |||
| 2810407C02Rik | MY | Medulla | 51.2 | |
| 63.47 | | |||
| 2810407C02Rik | OLF | Olfactory bulb | 70.27 | |
| 66.47 | | |||
| 2810407C02Rik | P | Pons | 45.76 | |
| 56.78 | | |||
| 2810407C02Rik | PAL | Pallidum | 40.28 | |
| 44.56 | | |||
| 2810407C02Rik | RHP | Retrohippocampal region | 93.81 | |
| 87.41 | | |||
| 2810407C02Rik | sAMY | Striatum-like amygdalar nuclei | 53.12 | |
| 46.92 | | |||
| 2810407C02Rik | STR | Striatum | 43.76 | |
| 34.85 | | |||
| 2810407C02Rik | STRd | Striatum dorsal region | 45.98 | |
| 35.69 | | |||
| 2810407C02Rik | STRv | Striatum ventral region | 45.93 | |
| 35.73 | | |||
| 2810407C02Rik | TH | Thalamus | 44.79 | |
| 43.52 | |