Annotation Detail for PDYN
Basic Information Top
| Gene Symbol: | PDYN ( MGC26418,PENKB ) |
|---|---|
| Gene Full Name: | prodynorphin |
| Band: | 20p13 |
| Quick Links | Entrez ID:5173; OMIM: 131340; Uniprot ID:PDYN_HUMAN; ENSEMBL ID: ENSG00000101327; HGNC ID: 8820 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.22584
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 2 / 1939121 | 1 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 |  |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 100 / 3360307 | 29 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 92 / 1100989 | 83 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 206803_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 4.4 | |
| Adipocyte | 3.55 | |
| AdrenalCortex | 4.25 | |
| Adrenalgland | 3 | |
| Amygdala | 13.95 | |
| Appendix | 4.45 | |
| AtrioventricularNode | 2.75 | |
| BDCA4+_DentriticCells | 3.85 | |
| Bonemarrow | 3.55 | |
| BronchialEpithelialCells | 3.5 | |
| CD105+_Endothelial | 3.55 | |
| CD14+_Monocytes | 3.8 | |
| CD19+_BCells(neg._sel.) | 3.8 | |
| CD33+_Myeloid | 4.55 | |
| CD34+ | 4.45 | |
| CD4+_Tcells | 3.8 | |
| CD56+_NKCells | 4.3 | |
| CD71+_EarlyErythroid | 3.35 | |
| CD8+_Tcells | 3.4 | |
| CardiacMyocytes | 4.5 | |
| Caudatenucleus | 94.9 | |
| Cerebellum | 2.9 | |
| CerebellumPeduncles | 4.3 | |
| CiliaryGanglion | 2.55 | |
| CingulateCortex | 3.65 | |
| Colorectaladenocarcinoma | 3.55 | |
| DorsalRootGanglion | 3.15 | |
| FetalThyroid | 3.5 | |
| Fetalbrain | 3.6 | |
| Fetalliver | 3.05 | |
| Fetallung | 2.95 | |
| GlobusPallidus | 2.7 | |
| Heart | 4.5 | |
| Hypothalamus | 7.9 | |
| Kidney | 3 | |
| Leukemia_chronicMyelogenousK-562 | 3.25 | |
| Leukemia_promyelocytic-HL-60 | 3.15 | |
| Leukemialymphoblastic(MOLT-4) | 2.9 | |
| Liver | 4.8 | |
| Lung | 3.85 | |
| Lymphnode | 3.05 | |
| Lymphoma_burkitts(Daudi) | 4.5 | |
| Lymphoma_burkitts(Raji) | 5.05 | |
| MedullaOblongata | 4.05 | |
| OccipitalLobe | 3.25 | |
| OlfactoryBulb | 2.85 | |
| Ovary | 2.45 | |
| Pancreas | 2.95 | |
| PancreaticIslet | 3.8 | |
| ParietalLobe | 3.8 | |
| Pituitary | 4.15 | |
| Placenta | 3.75 | |
| Pons | 38.55 | |
| PrefrontalCortex | 4.45 | |
| Prostate | 4.15 | |
| Salivarygland | 3 | |
| SkeletalMuscle | 9.55 | |
| Skin | 2.75 | |
| SmoothMuscle | 4 | |
| Spinalcord | 3.9 | |
| SubthalamicNucleus | 3.25 | |
| SuperiorCervicalGanglion | 5 | |
| TemporalLobe | 3.2 | |
| Testis | 5.6 | |
| TestisGermCell | 3.05 | |
| TestisIntersitial | 3.3 | |
| TestisLeydigCell | 3.75 | |
| TestisSeminiferousTubule | 3.1 | |
| Thalamus | 3.6 | |
| Thymus | 2.85 | |
| Thyroid | 4.4 | |
| Tongue | 3.5 | |
| Tonsil | 3.75 | |
| Trachea | 3 | |
| TrigeminalGanglion | 4.2 | |
| Uterus | 2.95 | |
| UterusCorpus | 3.45 | |
| WholeBlood | 3.9 | |
| Wholebrain | 3.1 | |
| colon | 3.6 | |
| pineal_day | 4.4 | |
| pineal_night | 4.3 | |
| retina | 4.3 | |
| small_intestine | 3.35 | |
- Probe name: CUST_630_PI417557136
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.79 ± 1.58 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.38 ± 1.03 | |
| Basal Part of Pons | 2.11 ± 0.48 | |
| Cerebellar Cortex | 1.87 ± 0.38 | |
| Cerebellar Nuclei | 2.34 ± 0.63 | |
| Claustrum | 2.98 ± 0.95 | |
| Epithalamus | 1.83 ± 0.87 | |
| Frontal Lobe | 2.11 ± 0.88 | |
| Globus Pallidus | 2.6 ± 0.6 | |
| Hypothalamus | 2.8 ± 1.03 | |
| Insula | 2.13 ± 0.87 | |
| Limbic Lobe | 3.11 ± 1.34 | |
| Mesencephalon | 2.62 ± 0.89 | |
| Myelencephalon | 2.52 ± 0.77 | |
| Occipital Lobe | 2.63 ± 1.19 | |
| Parietal Lobe | 2.38 ± 0.99 | |
| Pontine Tegmentum | 2.68 ± 1.1 | |
| Striatum | 4.95 ± 0.76 | |
| Subthalamus | 2.44 ± 0.82 | |
| Temporal Lobe | 2.59 ± 1.02 | |
| Thalamus | 2.11 ± 0.72 | |
| White Matter | 2.56 ± 0.71 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pdyn | CB | Cerebellum | 12.87 | |
| 16.72 | | |||
| Pdyn | CTX | Cerebral cortex | 27.56 | |
| 32.2 | | |||
| Pdyn | HIP | Hippocampal region | 23.01 | |
| 43.16 | | |||
| Pdyn | HPF | Hippocampal formation | 17.51 | |
| 27.96 | | |||
| Pdyn | HY | Hypothalamus | 26.86 | |
| 37.52 | | |||
| Pdyn | LSX | Lateral septal complex | 22.06 | |
| 35 | | |||
| Pdyn | MB | Midbrain | 13.51 | |
| 15.84 | | |||
| Pdyn | MY | Medulla | 16.31 | |
| 21.08 | | |||
| Pdyn | OLF | Olfactory bulb | 24.81 | |
| 24.08 | | |||
| Pdyn | P | Pons | 14.11 | |
| 17.66 | | |||
| Pdyn | PAL | Pallidum | 28.25 | |
| 44.36 | | |||
| Pdyn | RHP | Retrohippocampal region | 8.92 | |
| 9.24 | | |||
| Pdyn | sAMY | Striatum-like amygdalar nuclei | 46.81 | |
| 67.84 | | |||
| Pdyn | STR | Striatum | 89.93 | |
| 100 | | |||
| Pdyn | STRd | Striatum dorsal region | 87.49 | |
| 100 | | |||
| Pdyn | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| Pdyn | TH | Thalamus | 24.46 | |
| 25.58 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00064543 | 24 | 62 | 85 | CQSFLSFFTPSTLGLNDKEDLGSK | Peptide Atlas |