Annotation Detail for SEPX1
Basic Information Top
| Gene Symbol: | SEPX1 ( MGC3344,MSRB1,SELR,SELX ) |
|---|---|
| Gene Full Name: | selenoprotein X, 1 |
| Band: | 16p13.3 |
| Quick Links | Entrez ID:51734; OMIM: 606216; Uniprot ID:MSRB1_HUMAN; ENSEMBL ID: ENSG00000198736; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655346
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 24 / 564012 | 42 | |
| neonate | 2 / 31097 | 64 |  |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 105 / 1939121 | 54 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 14 / 114246 | 122 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 8 / 68959 | 116 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 12 / 103127 | 116 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 147 / 3360307 | 43 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 10 / 104616 | 95 | |
| primitive neuroectodermal tumor of the CNS | 10 / 125680 | 79 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 12 / 124949 | 96 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 13 / 211054 | 61 | |
| heart | 3 / 89626 | 33 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 23 / 211777 | 108 | |
| larynx | 0 / 24145 | 0 | |
| liver | 17 / 207743 | 81 | |
| lung | 26 / 336974 | 77 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 18 / 214812 | 83 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 21 / 280825 | 74 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 18 / 210574 | 85 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 6 / 96619 | 62 | |
| testis | 1 / 330442 | 3 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 20 / 232878 | 85 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P129492
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.85 ± 0.57 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.05 ± 0.36 | |
| Basal Part of Pons | 3.99 ± 0.54 | |
| Cerebellar Cortex | 4.18 ± 0.62 | |
| Cerebellar Nuclei | 3.98 ± 0.38 | |
| Claustrum | 3.49 ± 0.85 | |
| Epithalamus | 4.31 ± 0.57 | |
| Frontal Lobe | 4.21 ± 0.54 | |
| Globus Pallidus | 4.25 ± 0.29 | |
| Hypothalamus | 4.15 ± 0.4 | |
| Insula | 4.16 ± 0.5 | |
| Limbic Lobe | 4.02 ± 0.52 | |
| Mesencephalon | 4.23 ± 0.63 | |
| Myelencephalon | 4.11 ± 0.52 | |
| Occipital Lobe | 3.89 ± 0.5 | |
| Parietal Lobe | 4.07 ± 0.57 | |
| Pontine Tegmentum | 4.09 ± 0.55 | |
| Striatum | 4.29 ± 0.49 | |
| Subthalamus | 3.87 ± 1.1 | |
| Temporal Lobe | 4.11 ± 0.5 | |
| Thalamus | 4.11 ± 0.52 | |
| White Matter | 4.21 ± 0.5 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sepx1 | CB | Cerebellum | 20.47 | |
| 24.84 | | |||
| Sepx1 | CTX | Cerebral cortex | 63.44 | |
| 49.87 | | |||
| Sepx1 | HIP | Hippocampal region | 34.35 | |
| 46.17 | | |||
| Sepx1 | HPF | Hippocampal formation | 38.68 | |
| 42.97 | | |||
| Sepx1 | HY | Hypothalamus | 6.41 | |
| 5.38 | | |||
| Sepx1 | LSX | Lateral septal complex | 7.14 | |
| 4.97 | | |||
| Sepx1 | MB | Midbrain | 15.44 | |
| 14.92 | | |||
| Sepx1 | MY | Medulla | 17.92 | |
| 23.32 | | |||
| Sepx1 | OLF | Olfactory bulb | 39.19 | |
| 35.83 | | |||
| Sepx1 | P | Pons | 15.8 | |
| 20.51 | | |||
| Sepx1 | PAL | Pallidum | 17.42 | |
| 18 | | |||
| Sepx1 | RHP | Retrohippocampal region | 45.25 | |
| 38.7 | | |||
| Sepx1 | sAMY | Striatum-like amygdalar nuclei | 38.89 | |
| 28.96 | | |||
| Sepx1 | STR | Striatum | 28.91 | |
| 21.81 | | |||
| Sepx1 | STRd | Striatum dorsal region | 30.53 | |
| 23.16 | | |||
| Sepx1 | STRv | Striatum ventral region | 24.78 | |
| 18.93 | | |||
| Sepx1 | TH | Thalamus | 34.25 | |
| 33.1 | |