AutismKB 2.0

Annotation Detail for SYT17


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Basic Information Top
Gene Symbol:SYT17 ( - )
Gene Full Name: synaptotagmin XVII
Band: 16p12.3
Quick LinksEntrez ID:51760; OMIM: NA; Uniprot ID:SYT17_HUMAN; ENSEMBL ID: ENSG00000103528; HGNC ID: 24119
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor1 / 2638453
glioma6 / 10688356
head and neck tumor3 / 13630222
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma2 / 7175527
non-neoplasia1 / 9725010
normal51 / 336030715
ovarian tumor0 / 766820 
pancreatic tumor7 / 10461666
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain41 / 110098937
cervix1 / 4817120
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye5 / 21105423
heart0 / 896260 
intestine2 / 2344728
kidney4 / 21177718
larynx0 / 241450 
liver0 / 2077430 
lung9 / 33697426
lymph0 / 442700 
lymph node5 / 9161054
mammary gland3 / 15327119
mouth1 / 6705214
muscle2 / 10771518
nerve1 / 1576863
ovary2 / 10205119
pancreas10 / 21481246
parathyroid2 / 2053997
pharynx0 / 413280 
pituitary gland3 / 16585180
placenta2 / 2808257
prostate0 / 1893450 
salivary gland1 / 2015549
skin0 / 2105740 
spleen0 / 539520 
stomach2 / 9661920
testis0 / 3304420 
thymus0 / 811310 
thyroid2 / 4747342
tonsil1 / 1699958
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205613_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.6
Adipocyte4.95
AdrenalCortex5.05
Adrenalgland4.05
Amygdala30.5
Appendix4.85
AtrioventricularNode3.8
BDCA4+_DentriticCells4.95
Bonemarrow4.7
BronchialEpithelialCells4.5
CD105+_Endothelial4.7
CD14+_Monocytes4.8
CD19+_BCells(neg._sel.)20.25
CD33+_Myeloid5.9
CD34+6
CD4+_Tcells4.95
CD56+_NKCells5.7
CD71+_EarlyErythroid4.4
CD8+_Tcells4.4
CardiacMyocytes6.3
Caudatenucleus4.2
Cerebellum3.85
CerebellumPeduncles5.45
CiliaryGanglion3.4
CingulateCortex10.55
Colorectaladenocarcinoma4.8
DorsalRootGanglion4
FetalThyroid4.75
Fetalbrain7.2
Fetalliver4.15
Fetallung4.2
GlobusPallidus3.75
Heart6.05
Hypothalamus24.35
Kidney3.9
Leukemia_chronicMyelogenousK-5624.25
Leukemia_promyelocytic-HL-604.15
Leukemialymphoblastic(MOLT-4)3.7
Liver17.05
Lung13.65
Lymphnode4.65
Lymphoma_burkitts(Daudi)9.1
Lymphoma_burkitts(Raji)6.75
MedullaOblongata4.45
OccipitalLobe27.55
OlfactoryBulb4.3
Ovary3.15
Pancreas3.9
PancreaticIslet10.15
ParietalLobe7.45
Pituitary27.5
Placenta4.9
Pons4.6
PrefrontalCortex18.2
Prostate49.6
Salivarygland3.95
SkeletalMuscle5.85
Skin3.75
SmoothMuscle5.3
Spinalcord5.05
SubthalamicNucleus4.45
SuperiorCervicalGanglion5.55
TemporalLobe6.35
Testis4.05
TestisGermCell4
TestisIntersitial4
TestisLeydigCell4.7
TestisSeminiferousTubule4.15
Thalamus4.9
Thymus3.65
Thyroid6.95
Tongue4.7
Tonsil5.3
Trachea4
TrigeminalGanglion4.8
Uterus5
UterusCorpus4.35
WholeBlood5
Wholebrain32.15
colon4.85
pineal_day6.12
pineal_night6.36
retina7.25
small_intestine4.7
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1342_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.11 ± 0.58
Basal Forebrain6.39 ± 0.38
Basal Part of Pons6.01 ± 0.71
Cerebellar Cortex5.94 ± 0.5
Cerebellar Nuclei6.22 ± 0.24
Claustrum6.1 ± 0.49
Epithalamus7.35 ± 0.59
Frontal Lobe7.28 ± 0.5
Globus Pallidus6.7 ± 1.05
Hypothalamus7.24 ± 0.45
Insula7.63 ± 0.24
Limbic Lobe7.53 ± 0.82
Mesencephalon7.08 ± 0.89
Myelencephalon6.82 ± 0.85
Occipital Lobe5.73 ± 0.97
Parietal Lobe6.73 ± 0.68
Pontine Tegmentum6.79 ± 0.73
Striatum6 ± 1.34
Subthalamus5.43 ± 0.45
Temporal Lobe7.37 ± 0.59
Thalamus6.36 ± 0.7
White Matter5.4 ± 0.81
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Syt17CBCerebellum11.15
12.73
Syt17CTXCerebral cortex69.27
78.4
Syt17HIPHippocampal region95.42
100
Syt17HPFHippocampal formation82.95
100
Syt17HYHypothalamus26.52
23.87
Syt17LSXLateral septal complex8.1
9.02
Syt17MBMidbrain20.57
25.09
Syt17MYMedulla15.88
18.8
Syt17OLFOlfactory bulb87.42
100
Syt17PPons17.19
20.24
Syt17PALPallidum27.99
31.07
Syt17RHPRetrohippocampal region59.95
88.68
Syt17sAMYStriatum-like amygdalar nuclei24.98
24.47
Syt17STRStriatum9.64
8.84
Syt17STRdStriatum dorsal region7.2
6.42
Syt17STRvStriatum ventral region9.62
7.64
Syt17THThalamus26.73
29.22
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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