AutismKB 2.0

Annotation Detail for RSF1


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Basic Information Top
Gene Symbol:RSF1 ( HBXAP,RSF-1,XAP8,p325 )
Gene Full Name: remodeling and spacing factor 1
Band: 11q14.1
Quick LinksEntrez ID:51773; OMIM: 608522; Uniprot ID:RSF1_HUMAN; ENSEMBL ID: ENSG00000048649; HGNC ID: 18118
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst4 / 6231964
fetus28 / 56401249
neonate2 / 3109764
infant1 / 2362042
juvenile0 / 555560 
adult79 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor6 / 34366174
chondrosarcoma7 / 8282384
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor12 / 26384545
glioma3 / 10688328
head and neck tumor6 / 13630244
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal129 / 336030738
ovarian tumor17 / 76682221
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor2 / 12494916
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood1 / 1234788
bone4 / 7165555
bone marrow1 / 4880120
brain17 / 110098915
cervix6 / 48171124
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus0 / 202090 
eye8 / 21105437
heart2 / 8962622
intestine3 / 23447212
kidney6 / 21177728
larynx1 / 2414541
liver8 / 20774338
lung11 / 33697432
lymph2 / 4427045
lymph node7 / 9161076
mammary gland6 / 15327139
mouth3 / 6705244
muscle7 / 10771564
nerve0 / 157680 
ovary17 / 102051166
pancreas24 / 214812111
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate5 / 18934526
salivary gland0 / 201550 
skin8 / 21057437
spleen1 / 5395218
stomach3 / 9661931
testis7 / 33044221
thymus3 / 8113136
thyroid2 / 4747342
tonsil0 / 169990 
trachea5 / 5241395
umbilical cord1 / 1368073
uterus14 / 23287860
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218166_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.3
Adipocyte6.55
AdrenalCortex8.1
Adrenalgland5.9
Amygdala7.1
Appendix7.9
AtrioventricularNode6.3
BDCA4+_DentriticCells6.95
Bonemarrow7
BronchialEpithelialCells6.4
CD105+_Endothelial6.8
CD14+_Monocytes7.2
CD19+_BCells(neg._sel.)7.25
CD33+_Myeloid8.3
CD34+8.2
CD4+_Tcells7.35
CD56+_NKCells8.25
CD71+_EarlyErythroid6.45
CD8+_Tcells7.45
CardiacMyocytes10.6
Caudatenucleus6.15
Cerebellum5.55
CerebellumPeduncles7.95
CiliaryGanglion5.6
CingulateCortex7.1
Colorectaladenocarcinoma6.75
DorsalRootGanglion6.3
FetalThyroid6.85
Fetalbrain6.7
Fetalliver5.8
Fetallung5.25
GlobusPallidus5.2
Heart10.15
Hypothalamus6.9
Kidney5.85
Leukemia_chronicMyelogenousK-5626
Leukemia_promyelocytic-HL-606
Leukemialymphoblastic(MOLT-4)5.05
Liver9.65
Lung7.2
Lymphnode5.45
Lymphoma_burkitts(Daudi)8.85
Lymphoma_burkitts(Raji)10.3
MedullaOblongata6
OccipitalLobe6.1
OlfactoryBulb5.4
Ovary5
Pancreas5.6
PancreaticIslet7.2
ParietalLobe7.5
Pituitary8
Placenta6.5
Pons6.65
PrefrontalCortex8.25
Prostate7.7
Salivarygland5.6
SkeletalMuscle8.95
Skin5.9
SmoothMuscle7.6
Spinalcord7.25
SubthalamicNucleus6.4
SuperiorCervicalGanglion9.2
TemporalLobe6.25
Testis5.7
TestisGermCell6
TestisIntersitial5.75
TestisLeydigCell6.95
TestisSeminiferousTubule5.75
Thalamus6.95
Thymus5.05
Thyroid8.5
Tongue6.95
Tonsil6.7
Trachea5.6
TrigeminalGanglion8
Uterus9.9
UterusCorpus6.25
WholeBlood7.4
Wholebrain5.3
colon6.75
pineal_day8.6
pineal_night9.08
retina8.1
small_intestine6.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P395703
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.68 ± 0.32
Basal Forebrain8.79 ± 0.16
Basal Part of Pons8.63 ± 0.24
Cerebellar Cortex8.98 ± 0.21
Cerebellar Nuclei8.45 ± 0.27
Claustrum8.56 ± 0.53
Epithalamus9.09 ± 0.13
Frontal Lobe8.79 ± 0.27
Globus Pallidus8.74 ± 0.18
Hypothalamus9.02 ± 0.18
Insula8.87 ± 0.25
Limbic Lobe8.59 ± 0.33
Mesencephalon8.72 ± 0.3
Myelencephalon8.69 ± 0.33
Occipital Lobe8.43 ± 0.41
Parietal Lobe8.68 ± 0.24
Pontine Tegmentum8.77 ± 0.27
Striatum8.69 ± 0.28
Subthalamus8.62 ± 0.13
Temporal Lobe8.83 ± 0.24
Thalamus8.68 ± 0.24
White Matter9.06 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rsf1CBCerebellum2.89
3.94
Rsf1CTXCerebral cortex1.9
2.3
Rsf1HIPHippocampal region1.32
1.63
Rsf1HPFHippocampal formation1.06
1.32
Rsf1HYHypothalamus0.43
0.51
Rsf1LSXLateral septal complex0.51
1.35
Rsf1MBMidbrain1.22
1.87
Rsf1MYMedulla1.05
1.48
Rsf1OLFOlfactory bulb1.37
1.33
Rsf1PPons1.71
2.91
Rsf1PALPallidum0.79
1.05
Rsf1RHPRetrohippocampal region0.66
0.81
Rsf1sAMYStriatum-like amygdalar nuclei0.8
0.9
Rsf1STRStriatum0.77
1.14
Rsf1STRdStriatum dorsal region0.77
1.34
Rsf1STRvStriatum ventral region0.7
0.53
Rsf1THThalamus0.75
0.73
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00004705 22 641 662 LASEKEVVECQSTSTVGGQSVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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