AutismKB 2.0

Annotation Detail for ATP5G3


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Basic Information Top
Gene Symbol:ATP5G3 ( MGC125738,P3 )
Gene Full Name: ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
Band: 2q31.1
Quick LinksEntrez ID:518; OMIM: 602736; Uniprot ID:AT5G3_HUMAN; ENSEMBL ID: ENSG00000154518; HGNC ID: 843
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst9 / 62319144
fetus84 / 564012148
neonate5 / 31097160
infant4 / 23620169
juvenile4 / 5555671
adult196 / 1939121101
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma3 / 17475171
breast (mammary gland) tumor16 / 94178169
cervical tumor0 / 343660 
chondrosarcoma15 / 82823181
colorectal tumor16 / 114246140
esophageal tumor2 / 17290115
gastrointestinal tumor9 / 11936975
germ cell tumor16 / 26384560
glioma9 / 10688384
head and neck tumor2 / 13630214
kidney tumor12 / 68959174
leukemia19 / 95842198
liver tumor18 / 96359186
lung tumor8 / 10312777
lymphoma5 / 7175569
non-neoplasia5 / 9725051
normal402 / 3360307119
ovarian tumor19 / 76682247
pancreatic tumor16 / 104616152
primitive neuroectodermal tumor of the CNS13 / 125680103
prostate cancer21 / 102680204
retinoblastoma11 / 46356237
skin tumor33 / 124949264
soft tissue/muscle tissue tumor16 / 125191127
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland3 / 3319790
ascites2 / 4001549
bladder6 / 29757201
blood10 / 12347880
bone16 / 71655223
bone marrow14 / 48801286
brain80 / 110098972
cervix0 / 481710 
connective tissue7 / 14925546
ear8 / 16212493
embryonic tissue25 / 215722115
esophagus2 / 2020998
eye25 / 211054118
heart29 / 89626323
intestine33 / 234472140
kidney26 / 211777122
larynx0 / 241450 
liver28 / 207743134
lung41 / 336974121
lymph4 / 4427090
lymph node3 / 9161032
mammary gland22 / 153271143
mouth2 / 6705229
muscle20 / 107715185
nerve1 / 1576863
ovary21 / 102051205
pancreas52 / 214812242
parathyroid12 / 20539584
pharynx4 / 4132896
pituitary gland2 / 16585120
placenta20 / 28082571
prostate32 / 189345169
salivary gland3 / 20155148
skin53 / 210574251
spleen1 / 5395218
stomach12 / 96619124
testis18 / 33044254
thymus3 / 8113136
thyroid1 / 4747321
tonsil1 / 1699958
trachea1 / 5241319
umbilical cord4 / 13680292
uterus28 / 232878120
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207507_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts4218.85
Adipocyte1169.85
AdrenalCortex221.8
Adrenalgland394
Amygdala1125.8
Appendix80
AtrioventricularNode37.15
BDCA4+_DentriticCells1501.55
Bonemarrow531.35
BronchialEpithelialCells2127.15
CD105+_Endothelial1560.45
CD14+_Monocytes1105.1
CD19+_BCells(neg._sel.)857.8
CD33+_Myeloid1038.2
CD34+1752.45
CD4+_Tcells666.15
CD56+_NKCells1142.8
CD71+_EarlyErythroid853
CD8+_Tcells575.05
CardiacMyocytes761.35
Caudatenucleus468.2
Cerebellum662.6
CerebellumPeduncles789.5
CiliaryGanglion80.95
CingulateCortex592.8
Colorectaladenocarcinoma931.2
DorsalRootGanglion166.7
FetalThyroid519.6
Fetalbrain449.7
Fetalliver601.9
Fetallung658.8
GlobusPallidus305.6
Heart12308.1
Hypothalamus1236.25
Kidney1069.95
Leukemia_chronicMyelogenousK-5622005.2
Leukemia_promyelocytic-HL-602059.15
Leukemialymphoblastic(MOLT-4)1598.7
Liver2096.6
Lung953
Lymphnode375.75
Lymphoma_burkitts(Daudi)2341.65
Lymphoma_burkitts(Raji)1283.2
MedullaOblongata454.9
OccipitalLobe685.05
OlfactoryBulb261.8
Ovary143.2
Pancreas464.7
PancreaticIslet656.5
ParietalLobe530.35
Pituitary535.45
Placenta606.5
Pons331.3
PrefrontalCortex712.4
Prostate749.1
Salivarygland711.65
SkeletalMuscle276.7
Skin156.25
SmoothMuscle1184.5
Spinalcord541.9
SubthalamicNucleus403.95
SuperiorCervicalGanglion29.45
TemporalLobe540.2
Testis379.65
TestisGermCell414.7
TestisIntersitial187.4
TestisLeydigCell174.25
TestisSeminiferousTubule155.45
Thalamus1098.95
Thymus894.45
Thyroid1217.95
Tongue666
Tonsil668.5
Trachea347.7
TrigeminalGanglion72.55
Uterus407.15
UterusCorpus249.6
WholeBlood523.1
Wholebrain2070.1
colon3033.4
pineal_day994.2
pineal_night973.1
retina1165.95
small_intestine3355.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P174346
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.46 ± 0.5
Basal Forebrain5.22 ± 0.38
Basal Part of Pons5.64 ± 0.27
Cerebellar Cortex5.51 ± 0.29
Cerebellar Nuclei6.08 ± 0.52
Claustrum5.52 ± 0.57
Epithalamus5.03 ± 0.44
Frontal Lobe5.59 ± 0.44
Globus Pallidus5.2 ± 0.36
Hypothalamus5.41 ± 0.2
Insula5.59 ± 0.47
Limbic Lobe5.65 ± 0.45
Mesencephalon5.57 ± 0.52
Myelencephalon5.49 ± 0.43
Occipital Lobe5.73 ± 0.36
Parietal Lobe5.62 ± 0.39
Pontine Tegmentum5.58 ± 0.46
Striatum5.64 ± 0.33
Subthalamus5.81 ± 0.38
Temporal Lobe5.51 ± 0.4
Thalamus5.67 ± 0.34
White Matter4.04 ± 0.54
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Atp5g3CBCerebellum47.9
100
Atp5g3CTXCerebral cortex100
100
Atp5g3HIPHippocampal region100
100
Atp5g3HPFHippocampal formation100
100
Atp5g3HYHypothalamus88.83
100
Atp5g3LSXLateral septal complex100
100
Atp5g3MBMidbrain100
100
Atp5g3MYMedulla95.43
100
Atp5g3OLFOlfactory bulb94.32
100
Atp5g3PPons94.61
100
Atp5g3PALPallidum90.51
100
Atp5g3RHPRetrohippocampal region100
100
Atp5g3sAMYStriatum-like amygdalar nuclei90.75
100
Atp5g3STRStriatum100
100
Atp5g3STRdStriatum dorsal region100
100
Atp5g3STRvStriatum ventral region90.81
92.41
Atp5g3THThalamus100
100
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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