AutismKB 2.0

Annotation Detail for GALNT7


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Basic Information Top
Gene Symbol:GALNT7 ( GALNAC-T7,GalNAcT7 )
Gene Full Name: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7)
Band: 4q34.1
Quick LinksEntrez ID:51809; OMIM: 605005; Uniprot ID:GALT7_HUMAN; ENSEMBL ID: ENSG00000109586; HGNC ID: 4129
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst5 / 6231980
fetus9 / 56401215
neonate1 / 3109732
infant0 / 236200 
juvenile5 / 5555689
adult99 / 193912151
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor8 / 9417884
cervical tumor2 / 3436658
chondrosarcoma0 / 828230 
colorectal tumor8 / 11424670
esophageal tumor1 / 1729057
gastrointestinal tumor4 / 11936933
germ cell tumor21 / 26384579
glioma5 / 10688346
head and neck tumor10 / 13630273
kidney tumor4 / 6895958
leukemia7 / 9584273
liver tumor3 / 9635931
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia4 / 9725041
normal106 / 336030731
ovarian tumor5 / 7668265
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer10 / 10268097
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor9 / 9025799
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder1 / 2975733
blood3 / 12347824
bone1 / 7165513
bone marrow2 / 4880140
brain43 / 110098939
cervix2 / 4817141
connective tissue1 / 1492556
ear1 / 1621261
embryonic tissue17 / 21572278
esophagus1 / 2020949
eye9 / 21105442
heart1 / 8962611
intestine16 / 23447268
kidney6 / 21177728
larynx2 / 2414582
liver6 / 20774328
lung10 / 33697429
lymph0 / 442700 
lymph node5 / 9161054
mammary gland8 / 15327152
mouth6 / 6705289
muscle5 / 10771546
nerve1 / 1576863
ovary5 / 10205148
pancreas12 / 21481255
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta7 / 28082524
prostate11 / 18934558
salivary gland1 / 2015549
skin1 / 2105744
spleen1 / 5395218
stomach7 / 9661972
testis22 / 33044266
thymus18 / 81131221
thyroid2 / 4747342
tonsil0 / 169990 
trachea15 / 52413286
umbilical cord1 / 1368073
uterus10 / 23287842
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218313_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts123.8
Adipocyte6.35
AdrenalCortex8.05
Adrenalgland5.45
Amygdala12
Appendix9.1
AtrioventricularNode6.9
BDCA4+_DentriticCells123.6
Bonemarrow7.25
BronchialEpithelialCells109.3
CD105+_Endothelial58.2
CD14+_Monocytes69.5
CD19+_BCells(neg._sel.)23.9
CD33+_Myeloid165.1
CD34+239.55
CD4+_Tcells22.9
CD56+_NKCells22.4
CD71+_EarlyErythroid6.35
CD8+_Tcells42.8
CardiacMyocytes13.2
Caudatenucleus7.2
Cerebellum6.75
CerebellumPeduncles10.2
CiliaryGanglion5.9
CingulateCortex7.9
Colorectaladenocarcinoma46.1
DorsalRootGanglion6.6
FetalThyroid7.95
Fetalbrain7.6
Fetalliver6.95
Fetallung10.4
GlobusPallidus6.7
Heart11.1
Hypothalamus15.45
Kidney5.65
Leukemia_chronicMyelogenousK-56211.2
Leukemia_promyelocytic-HL-607.8
Leukemialymphoblastic(MOLT-4)29.7
Liver9.7
Lung6.7
Lymphnode9.5
Lymphoma_burkitts(Daudi)24.7
Lymphoma_burkitts(Raji)11
MedullaOblongata7.55
OccipitalLobe7.6
OlfactoryBulb8.65
Ovary6.5
Pancreas16.05
PancreaticIslet11.4
ParietalLobe7.85
Pituitary8.95
Placenta7.6
Pons7.55
PrefrontalCortex11.1
Prostate94.1
Salivarygland24.5
SkeletalMuscle9.3
Skin6.45
SmoothMuscle61
Spinalcord33.25
SubthalamicNucleus6.4
SuperiorCervicalGanglion9.95
TemporalLobe6.85
Testis5.7
TestisGermCell38.8
TestisIntersitial6.5
TestisLeydigCell10.35
TestisSeminiferousTubule7.45
Thalamus8
Thymus21.1
Thyroid16.25
Tongue8.15
Tonsil7.75
Trachea66.85
TrigeminalGanglion8.1
Uterus19.95
UterusCorpus6.95
WholeBlood49.45
Wholebrain6.85
colon320.65
pineal_day8.18
pineal_night8.44
retina15.8
small_intestine51.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_1992_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.33 ± 0.69
Basal Forebrain7.56 ± 0.33
Basal Part of Pons7.61 ± 0.2
Cerebellar Cortex7.66 ± 0.18
Cerebellar Nuclei7.5 ± 0.38
Claustrum6.6 ± 0.48
Epithalamus7.23 ± 0.39
Frontal Lobe7.07 ± 0.33
Globus Pallidus7.67 ± 0.59
Hypothalamus7.02 ± 0.29
Insula6.96 ± 0.3
Limbic Lobe7.07 ± 0.45
Mesencephalon7.2 ± 0.48
Myelencephalon7.34 ± 0.34
Occipital Lobe7.64 ± 0.49
Parietal Lobe7.13 ± 0.39
Pontine Tegmentum7.2 ± 0.33
Striatum7.6 ± 0.59
Subthalamus7.19 ± 0.23
Temporal Lobe7.12 ± 0.3
Thalamus7.39 ± 0.31
White Matter8.8 ± 0.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Galnt7CBCerebellum1.34
1.54
Galnt7CTXCerebral cortex0.6
0.96
Galnt7HIPHippocampal region0.48
0.56
Galnt7HPFHippocampal formation0.36
0.41
Galnt7HYHypothalamus0.03
0.04
Galnt7LSXLateral septal complex0
0
Galnt7MBMidbrain0.21
0.35
Galnt7MYMedulla0.24
0.28
Galnt7OLFOlfactory bulb0.63
1.14
Galnt7PPons0.18
0.32
Galnt7PALPallidum0.21
0.15
Galnt7RHPRetrohippocampal region0.14
0.2
Galnt7sAMYStriatum-like amygdalar nuclei0.08
0.07
Galnt7STRStriatum0.05
0.05
Galnt7STRdStriatum dorsal region0.06
0.06
Galnt7STRvStriatum ventral region0.02
0.01
Galnt7THThalamus0.1
0.28
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00007074 16 629 644 SEVLHQVFISNCDSSK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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