AutismKB 2.0

Annotation Detail for PLTP


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Basic Information Top
Gene Symbol:PLTP ( HDLCQ9 )
Gene Full Name: phospholipid transfer protein
Band: 20q13.12
Quick LinksEntrez ID:5360; OMIM: 172425; Uniprot ID:PLTP_HUMAN; ENSEMBL ID: ENSG00000100979; HGNC ID: 9093
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body16 / 70761226
blastocyst7 / 62319112
fetus52 / 56401292
neonate1 / 3109732
infant1 / 2362042
juvenile1 / 5555617
adult431 / 1939121222
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor2 / 9417821
cervical tumor2 / 3436658
chondrosarcoma5 / 8282360
colorectal tumor6 / 11424652
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor35 / 263845132
glioma18 / 106883168
head and neck tumor13 / 13630295
kidney tumor11 / 68959159
leukemia3 / 9584231
liver tumor5 / 9635951
lung tumor10 / 10312796
lymphoma2 / 7175527
non-neoplasia11 / 97250113
normal552 / 3360307164
ovarian tumor23 / 76682299
pancreatic tumor26 / 104616248
primitive neuroectodermal tumor of the CNS23 / 125680183
prostate cancer3 / 10268029
retinoblastoma6 / 46356129
skin tumor4 / 12494932
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor23 / 90257254
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue8 / 13106610
adrenal gland1 / 3319730
ascites2 / 4001549
bladder2 / 2975767
blood3 / 12347824
bone11 / 71655153
bone marrow0 / 488010 
brain119 / 1100989108
cervix2 / 4817141
connective tissue11 / 14925573
ear3 / 16212185
embryonic tissue40 / 215722185
esophagus2 / 2020998
eye24 / 211054113
heart8 / 8962689
intestine18 / 23447276
kidney15 / 21177770
larynx3 / 24145124
liver9 / 20774343
lung24 / 33697471
lymph0 / 442700 
lymph node0 / 916100 
mammary gland24 / 153271156
mouth3 / 6705244
muscle7 / 10771564
nerve0 / 157680 
ovary38 / 102051372
pancreas35 / 214812162
parathyroid0 / 205390 
pharynx5 / 41328120
pituitary gland1 / 1658560
placenta231 / 280825822
prostate9 / 18934547
salivary gland3 / 20155148
skin14 / 21057466
spleen1 / 5395218
stomach7 / 9661972
testis17 / 33044251
thymus25 / 81131308
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus30 / 232878128
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202075_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts15.75
Adipocyte270.05
AdrenalCortex88.55
Adrenalgland201.35
Amygdala81.7
Appendix64.85
AtrioventricularNode15.65
BDCA4+_DentriticCells21
Bonemarrow38.7
BronchialEpithelialCells195.6
CD105+_Endothelial32.25
CD14+_Monocytes15.5
CD19+_BCells(neg._sel.)10.95
CD33+_Myeloid17.2
CD34+46.45
CD4+_Tcells10.2
CD56+_NKCells19.95
CD71+_EarlyErythroid10.35
CD8+_Tcells12.1
CardiacMyocytes53.75
Caudatenucleus107.15
Cerebellum67.9
CerebellumPeduncles63.5
CiliaryGanglion21.8
CingulateCortex26.35
Colorectaladenocarcinoma33.85
DorsalRootGanglion24.6
FetalThyroid33.45
Fetalbrain26.8
Fetalliver39.4
Fetallung212.1
GlobusPallidus26.6
Heart108
Hypothalamus82.7
Kidney20.5
Leukemia_chronicMyelogenousK-56211.95
Leukemia_promyelocytic-HL-608.95
Leukemialymphoblastic(MOLT-4)7.75
Liver42.4
Lung319.35
Lymphnode122
Lymphoma_burkitts(Daudi)12.85
Lymphoma_burkitts(Raji)20.65
MedullaOblongata23.1
OccipitalLobe61.4
OlfactoryBulb65.85
Ovary295.8
Pancreas103.95
PancreaticIslet171.3
ParietalLobe26.75
Pituitary46.2
Placenta2067.95
Pons41.4
PrefrontalCortex161.75
Prostate84.55
Salivarygland33.85
SkeletalMuscle33.5
Skin37.65
SmoothMuscle181.95
Spinalcord198.25
SubthalamicNucleus19.7
SuperiorCervicalGanglion31.95
TemporalLobe25.9
Testis37.85
TestisGermCell35.9
TestisIntersitial27.8
TestisLeydigCell30.85
TestisSeminiferousTubule28.45
Thalamus49.85
Thymus965.55
Thyroid44.7
Tongue19.4
Tonsil21.6
Trachea221.4
TrigeminalGanglion18.6
Uterus190.35
UterusCorpus57.65
WholeBlood18.2
Wholebrain53.85
colon35.35
pineal_day204.92
pineal_night212.34
retina641.175
small_intestine46.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_513_PI416408490
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.22 ± 0.38
Basal Forebrain6.57 ± 0.21
Basal Part of Pons5.54 ± 0.37
Cerebellar Cortex5.88 ± 0.38
Cerebellar Nuclei5.49 ± 0.3
Claustrum5.28 ± 0.66
Epithalamus8.01 ± 0.88
Frontal Lobe6.11 ± 0.56
Globus Pallidus6.97 ± 0.34
Hypothalamus6.4 ± 0.5
Insula6.03 ± 0.64
Limbic Lobe5.93 ± 0.6
Mesencephalon6.23 ± 0.72
Myelencephalon6.22 ± 0.66
Occipital Lobe6.1 ± 0.53
Parietal Lobe5.98 ± 0.61
Pontine Tegmentum6.03 ± 0.55
Striatum6.71 ± 0.61
Subthalamus5.74 ± 0.58
Temporal Lobe5.99 ± 0.53
Thalamus6.25 ± 0.47
White Matter4.41 ± 0.72
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
PltpCBCerebellum79.75
100
PltpCTXCerebral cortex63.73
65.66
PltpHIPHippocampal region52.56
74.74
PltpHPFHippocampal formation55.7
71.44
PltpHYHypothalamus42.79
52.96
PltpLSXLateral septal complex86.06
95.91
PltpMBMidbrain55.54
69.12
PltpMYMedulla65.1
68.99
PltpOLFOlfactory bulb68.93
72.15
PltpPPons59.66
67.66
PltpPALPallidum44.14
55.12
PltpRHPRetrohippocampal region61.69
64.01
PltpsAMYStriatum-like amygdalar nuclei46.26
57.39
PltpSTRStriatum55.16
61.16
PltpSTRdStriatum dorsal region52.59
57.06
PltpSTRvStriatum ventral region46.39
45.24
PltpTHThalamus59.77
67.89
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00024892 12 58 69 EGHFYYNISEVK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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