AutismKB 2.0

Annotation Detail for C11orf24


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Basic Information Top
Gene Symbol:C11orf24 ( DM4E3 )
Gene Full Name: chromosome 11 open reading frame 24
Band: 11q13.2
Quick LinksEntrez ID:53838; OMIM: 610880; Uniprot ID:CK024_HUMAN; ENSEMBL ID: ENSG00000171067; HGNC ID: 1174
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst0 / 623190 
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile5 / 5555689
adult100 / 193912151
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor15 / 114246131
esophageal tumor0 / 172900 
gastrointestinal tumor14 / 119369117
germ cell tumor3 / 26384511
glioma0 / 1068830 
head and neck tumor5 / 13630236
kidney tumor3 / 6895943
leukemia4 / 9584241
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma11 / 71755153
non-neoplasia2 / 9725020
normal104 / 336030730
ovarian tumor2 / 7668226
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS9 / 12568071
prostate cancer6 / 10268058
retinoblastoma0 / 463560 
skin tumor22 / 124949176
soft tissue/muscle tissue tumor7 / 12519155
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites3 / 4001574
bladder0 / 297570 
blood4 / 12347832
bone5 / 7165569
bone marrow1 / 4880120
brain24 / 110098921
cervix3 / 4817162
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus0 / 202090 
eye5 / 21105423
heart1 / 8962611
intestine19 / 23447281
kidney3 / 21177714
larynx0 / 241450 
liver1 / 2077434
lung10 / 33697429
lymph0 / 442700 
lymph node7 / 9161076
mammary gland8 / 15327152
mouth3 / 6705244
muscle1 / 1077159
nerve2 / 15768126
ovary2 / 10205119
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta25 / 28082589
prostate13 / 18934568
salivary gland2 / 2015599
skin29 / 210574137
spleen0 / 539520 
stomach4 / 9661941
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil5 / 16999294
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 52164_at
Cell line Expression level Expression bar
721_B_lymphoblasts84.55
Adipocyte26.95
AdrenalCortex17.3
Adrenalgland14.25
Amygdala19.65
Appendix18.3
AtrioventricularNode12.7
BDCA4+_DentriticCells73.5
Bonemarrow16.55
BronchialEpithelialCells31.4
CD105+_Endothelial41.35
CD14+_Monocytes30
CD19+_BCells(neg._sel.)96.5
CD33+_Myeloid23.75
CD34+22.45
CD4+_Tcells17.85
CD56+_NKCells46.75
CD71+_EarlyErythroid16.05
CD8+_Tcells16.7
CardiacMyocytes34.95
Caudatenucleus14.05
Cerebellum13
CerebellumPeduncles19.05
CiliaryGanglion11.8
CingulateCortex15.75
Colorectaladenocarcinoma46.65
DorsalRootGanglion13.6
FetalThyroid17
Fetalbrain16.8
Fetalliver14.85
Fetallung14.85
GlobusPallidus10.7
Heart35.05
Hypothalamus21.35
Kidney14.45
Leukemia_chronicMyelogenousK-56216.45
Leukemia_promyelocytic-HL-6019.45
Leukemialymphoblastic(MOLT-4)9.05
Liver125.75
Lung21.4
Lymphnode14.9
Lymphoma_burkitts(Daudi)21.85
Lymphoma_burkitts(Raji)27.15
MedullaOblongata15.55
OccipitalLobe15.2
OlfactoryBulb21.3
Ovary11.3
Pancreas16.6
PancreaticIslet18.65
ParietalLobe17.95
Pituitary17.9
Placenta21.15
Pons13.6
PrefrontalCortex20.55
Prostate27.05
Salivarygland13.95
SkeletalMuscle18.9
Skin13
SmoothMuscle123.85
Spinalcord18.65
SubthalamicNucleus12.65
SuperiorCervicalGanglion19.2
TemporalLobe13.6
Testis15.2
TestisGermCell13.85
TestisIntersitial13.9
TestisLeydigCell17.15
TestisSeminiferousTubule14.75
Thalamus17.65
Thymus13.55
Thyroid25.2
Tongue16.35
Tonsil17
Trachea14.65
TrigeminalGanglion19.6
Uterus24.75
UterusCorpus16.3
WholeBlood21.05
Wholebrain18.1
colon29.15
pineal_day20.88
pineal_night21.22
retina37.625
small_intestine66.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P12911
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.87 ± 0.37
Basal Forebrain8.17 ± 0.2
Basal Part of Pons8.74 ± 0.14
Cerebellar Cortex8.19 ± 0.12
Cerebellar Nuclei8.89 ± 0.15
Claustrum8.36 ± 0.36
Epithalamus7.89 ± 0.28
Frontal Lobe8.54 ± 0.32
Globus Pallidus8.72 ± 0.14
Hypothalamus7.92 ± 0.33
Insula8.17 ± 0.22
Limbic Lobe8.35 ± 0.35
Mesencephalon8.39 ± 0.4
Myelencephalon8.41 ± 0.36
Occipital Lobe8.47 ± 0.3
Parietal Lobe8.4 ± 0.35
Pontine Tegmentum8.41 ± 0.29
Striatum8.66 ± 0.35
Subthalamus8.64 ± 0.38
Temporal Lobe8.4 ± 0.29
Thalamus8.58 ± 0.23
White Matter9.68 ± 0.06
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
1810055G02RikCBCerebellum0.94
1.49
1810055G02RikCTXCerebral cortex3.26
2.94
1810055G02RikHIPHippocampal region8.99
8.65
1810055G02RikHPFHippocampal formation6.99
6.28
1810055G02RikHYHypothalamus0.27
0.6
1810055G02RikLSXLateral septal complex0.08
0.13
1810055G02RikMBMidbrain0.26
0.98
1810055G02RikMYMedulla1.71
3.56
1810055G02RikOLFOlfactory bulb9.95
8.67
1810055G02RikPPons1.84
4.07
1810055G02RikPALPallidum0.32
0.35
1810055G02RikRHPRetrohippocampal region2.5
2.04
1810055G02RiksAMYStriatum-like amygdalar nuclei0.94
1.48
1810055G02RikSTRStriatum0.98
1.04
1810055G02RikSTRdStriatum dorsal region1.04
0.97
1810055G02RikSTRvStriatum ventral region1.21
1.46
1810055G02RikTHThalamus0.96
0.88
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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