AutismKB 2.0

Annotation Detail for CDHR5


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Basic Information Top
Gene Symbol:CDHR5 ( FLJ20219,MU-PCDH,MUCDHL,MUPCDH )
Gene Full Name: cadherin-related family member 5
Band: 11p15.5
Quick LinksEntrez ID:53841; OMIM: 606839; Uniprot ID:CDHR5_HUMAN; ENSEMBL ID: ENSG00000099834; HGNC ID: 7521
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult32 / 193912116
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor13 / 114246113
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor2 / 2638457
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal105 / 336030731
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder1 / 2975733
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain37 / 110098933
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine44 / 234472187
kidney33 / 211777155
larynx0 / 241450 
liver9 / 20774343
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach5 / 9661951
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220074_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.8
Adipocyte8.5
AdrenalCortex9.25
Adrenalgland7.45
Amygdala8.75
Appendix11.9
AtrioventricularNode7.35
BDCA4+_DentriticCells8.25
Bonemarrow9.05
BronchialEpithelialCells8.2
CD105+_Endothelial5.5
CD14+_Monocytes8.9
CD19+_BCells(neg._sel.)8.25
CD33+_Myeloid10.2
CD34+9.95
CD4+_Tcells8.5
CD56+_NKCells7.45
CD71+_EarlyErythroid7.7
CD8+_Tcells7.95
CardiacMyocytes12.6
Caudatenucleus8.65
Cerebellum7
CerebellumPeduncles11.6
CiliaryGanglion6
CingulateCortex10
Colorectaladenocarcinoma8.15
DorsalRootGanglion6.2
FetalThyroid8.15
Fetalbrain8.65
Fetalliver10.85
Fetallung7
GlobusPallidus6.8
Heart12.3
Hypothalamus12.95
Kidney18.8
Leukemia_chronicMyelogenousK-5627.8
Leukemia_promyelocytic-HL-607.25
Leukemialymphoblastic(MOLT-4)6.95
Liver30.9
Lung9.15
Lymphnode6.85
Lymphoma_burkitts(Daudi)10.6
Lymphoma_burkitts(Raji)14.9
MedullaOblongata9.25
OccipitalLobe8.95
OlfactoryBulb7.1
Ovary5.5
Pancreas7.9
PancreaticIslet9.05
ParietalLobe10.55
Pituitary15.2
Placenta8.4
Pons8.1
PrefrontalCortex10.05
Prostate9.7
Salivarygland6.85
SkeletalMuscle12.1
Skin6.2
SmoothMuscle9.45
Spinalcord8.95
SubthalamicNucleus7.4
SuperiorCervicalGanglion10.2
TemporalLobe7.65
Testis8.15
TestisGermCell6.85
TestisIntersitial7.05
TestisLeydigCell9.25
TestisSeminiferousTubule7.1
Thalamus8.55
Thymus6.05
Thyroid10.35
Tongue10.4
Tonsil8.2
Trachea7
TrigeminalGanglion7.95
Uterus6.75
UterusCorpus8.8
WholeBlood9.1
Wholebrain7.4
colon8.8
pineal_day8.6
pineal_night8.34
retina12.6
small_intestine9.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P352388
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.5 ± 1.06
Basal Forebrain2.12 ± 0.35
Basal Part of Pons1.82 ± 0.62
Cerebellar Cortex1.92 ± 0.75
Cerebellar Nuclei2.57 ± 1.02
Claustrum3.08 ± 0.95
Epithalamus1.72 ± 0.74
Frontal Lobe1.97 ± 0.78
Globus Pallidus2.76 ± 0.43
Hypothalamus2.31 ± 0.66
Insula1.99 ± 0.57
Limbic Lobe2.14 ± 0.71
Mesencephalon2.27 ± 0.72
Myelencephalon2.16 ± 0.72
Occipital Lobe2.23 ± 0.7
Parietal Lobe2.1 ± 0.83
Pontine Tegmentum2.11 ± 0.73
Striatum2.21 ± 0.49
Subthalamus2.23 ± 0.63
Temporal Lobe2.01 ± 0.74
Thalamus2.09 ± 0.61
White Matter2.41 ± 0.24
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
MucdhlCBCerebellum5.52
6.49
MucdhlCTXCerebral cortex2.9
2.47
MucdhlHIPHippocampal region3.24
3.43
MucdhlHPFHippocampal formation3.37
3.13
MucdhlHYHypothalamus1.15
1.26
MucdhlLSXLateral septal complex0.71
1.03
MucdhlMBMidbrain1.03
1.43
MucdhlMYMedulla2.5
2.76
MucdhlOLFOlfactory bulb9.82
8.18
MucdhlPPons1.84
2.33
MucdhlPALPallidum1.75
1.47
MucdhlRHPRetrohippocampal region3.53
2.7
MucdhlsAMYStriatum-like amygdalar nuclei0.72
0.68
MucdhlSTRStriatum2.14
1.81
MucdhlSTRdStriatum dorsal region1.11
1.19
MucdhlSTRvStriatum ventral region6.82
4.48
MucdhlTHThalamus1.79
1.81
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp01154640 18 110 127 VFVSVLDVNDNAPEFPFK Peptide Atlas
Q58EZ6_HUMAN_353 21 353 373 FPQSLYRGTVARGAGAGVVVK PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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