AutismKB 2.0

Annotation Detail for SLCO1C1


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Basic Information Top
Gene Symbol:SLCO1C1 ( OATP-F,OATP1,OATP14,OATP1C1,OATPF,OATPRP5,SLC21A14 )
Gene Full Name: solute carrier organic anion transporter family, member 1C1
Band: 12p12.2
Quick LinksEntrez ID:53919; OMIM: 613389; Uniprot ID:SO1C1_HUMAN; ENSEMBL ID: ENSG00000139155; HGNC ID: 13819
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus12 / 56401221
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult17 / 19391218
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor2 / 13630214
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia4 / 9725041
normal38 / 336030711
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain37 / 110098933
cervix0 / 481710 
connective tissue4 / 14925526
ear4 / 16212246
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney1 / 2117774
larynx0 / 241450 
liver0 / 2077430 
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve1 / 1576863
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach1 / 9661910
testis0 / 3304420 
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220460_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.95
Adipocyte6.35
AdrenalCortex7.15
Adrenalgland5.5
Amygdala22.7
Appendix8.8
AtrioventricularNode8.7
BDCA4+_DentriticCells5.55
Bonemarrow6.7
BronchialEpithelialCells6.35
CD105+_Endothelial5.95
CD14+_Monocytes6.45
CD19+_BCells(neg._sel.)6.75
CD33+_Myeloid7.95
CD34+7.25
CD4+_Tcells6.8
CD56+_NKCells7.15
CD71+_EarlyErythroid6
CD8+_Tcells6.05
CardiacMyocytes9.15
Caudatenucleus20.35
Cerebellum5.35
CerebellumPeduncles7.35
CiliaryGanglion5
CingulateCortex7.85
Colorectaladenocarcinoma6.5
DorsalRootGanglion5.35
FetalThyroid6.6
Fetalbrain25.4
Fetalliver5.7
Fetallung5.2
GlobusPallidus4.85
Heart8.35
Hypothalamus12.15
Kidney5.6
Leukemia_chronicMyelogenousK-5625.85
Leukemia_promyelocytic-HL-605.7
Leukemialymphoblastic(MOLT-4)4.7
Liver9.05
Lung7
Lymphnode5.45
Lymphoma_burkitts(Daudi)8.5
Lymphoma_burkitts(Raji)9.6
MedullaOblongata16.95
OccipitalLobe22.2
OlfactoryBulb5.75
Ovary4.85
Pancreas5.35
PancreaticIslet7
ParietalLobe7.1
Pituitary9.4
Placenta6.55
Pons9.95
PrefrontalCortex34.25
Prostate6.95
Salivarygland5.3
SkeletalMuscle7.95
Skin5.25
SmoothMuscle7.25
Spinalcord7.55
SubthalamicNucleus6.05
SuperiorCervicalGanglion19.5
TemporalLobe10.3
Testis5.55
TestisGermCell5.25
TestisIntersitial5.4
TestisLeydigCell6.55
TestisSeminiferousTubule5.55
Thalamus6.7
Thymus4.55
Thyroid7.95
Tongue6.6
Tonsil6.35
Trachea5.5
TrigeminalGanglion7
Uterus5.3
UterusCorpus9.1
WholeBlood6.5
Wholebrain9.6
colon6.55
pineal_day8.44
pineal_night16.74
retina14.825
small_intestine6.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P116868
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.12 ± 0.72
Basal Forebrain4.73 ± 0.76
Basal Part of Pons3.86 ± 0.42
Cerebellar Cortex3.64 ± 0.48
Cerebellar Nuclei3.92 ± 0.69
Claustrum4.04 ± 1.41
Epithalamus4.11 ± 0.81
Frontal Lobe4.63 ± 0.67
Globus Pallidus4.05 ± 0.71
Hypothalamus4.45 ± 0.45
Insula4.67 ± 0.72
Limbic Lobe4.37 ± 0.74
Mesencephalon4.56 ± 0.74
Myelencephalon4.49 ± 0.76
Occipital Lobe4.57 ± 0.87
Parietal Lobe4.49 ± 0.82
Pontine Tegmentum4.66 ± 0.88
Striatum5.68 ± 0.37
Subthalamus3.93 ± 0.79
Temporal Lobe4.57 ± 0.63
Thalamus4.49 ± 0.65
White Matter2.2 ± 1
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Slco1c1CBCerebellum30.13
31.24
Slco1c1CTXCerebral cortex30.82
20.18
Slco1c1HIPHippocampal region18.79
14.94
Slco1c1HPFHippocampal formation17.54
12.85
Slco1c1HYHypothalamus7.86
5.45
Slco1c1LSXLateral septal complex17.67
14.41
Slco1c1MBMidbrain11.39
8.4
Slco1c1MYMedulla56.03
68.67
Slco1c1OLFOlfactory bulb38.93
25.16
Slco1c1PPons28.59
32.49
Slco1c1PALPallidum9.19
6.32
Slco1c1RHPRetrohippocampal region15
9.67
Slco1c1sAMYStriatum-like amygdalar nuclei14.72
11.47
Slco1c1STRStriatum21.86
15.3
Slco1c1STRdStriatum dorsal region22.85
16.14
Slco1c1STRvStriatum ventral region20.97
11.73
Slco1c1THThalamus13.79
12.46
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009232 11 600 610 AGIPAPVYFGV Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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