AutismKB 2.0

Annotation Detail for CNTN5


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Basic Information Top
Gene Symbol:CNTN5 ( HNB-2s,MGC163491,NB-2 )
Gene Full Name: contactin 5
Band: 11q22.1
Quick LinksEntrez ID:53942; OMIM: 607219; Uniprot ID:CNTN5_HUMAN; ENSEMBL ID: ENSG00000149972; HGNC ID: 2175
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst0 / 623190 
fetus3 / 5640125
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult12 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal28 / 33603078
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain13 / 110098911
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye2 / 2110549
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver1 / 2077434
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta5 / 28082517
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 207452_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.5
Adipocyte5.7
AdrenalCortex6.55
Adrenalgland4.9
Amygdala5.95
Appendix6.7
AtrioventricularNode5.5
BDCA4+_DentriticCells5.8
Bonemarrow6.15
BronchialEpithelialCells5.5
CD105+_Endothelial5.7
CD14+_Monocytes6.05
CD19+_BCells(neg._sel.)6
CD33+_Myeloid7.15
CD34+6.95
CD4+_Tcells5.85
CD56+_NKCells6.6
CD71+_EarlyErythroid5.4
CD8+_Tcells5.5
CardiacMyocytes9.5
Caudatenucleus5.1
Cerebellum4.65
CerebellumPeduncles6.55
CiliaryGanglion4.85
CingulateCortex5.9
Colorectaladenocarcinoma5.75
DorsalRootGanglion4.7
FetalThyroid5.85
Fetalbrain5.5
Fetalliver5.05
Fetallung4.4
GlobusPallidus4.55
Heart9.1
Hypothalamus6.1
Kidney4.95
Leukemia_chronicMyelogenousK-5625.15
Leukemia_promyelocytic-HL-605.05
Leukemialymphoblastic(MOLT-4)4.45
Liver8.45
Lung6.2
Lymphnode4.75
Lymphoma_burkitts(Daudi)7.45
Lymphoma_burkitts(Raji)8.8
MedullaOblongata5.1
OccipitalLobe5.1
OlfactoryBulb4.45
Ovary4.15
Pancreas4.75
PancreaticIslet6.1
ParietalLobe6.35
Pituitary6.65
Placenta5.85
Pons5.65
PrefrontalCortex6.75
Prostate6.6
Salivarygland4.75
SkeletalMuscle8.3
Skin5.2
SmoothMuscle6.45
Spinalcord6.1
SubthalamicNucleus5.4
SuperiorCervicalGanglion8.15
TemporalLobe5.35
Testis4.85
TestisGermCell4.55
TestisIntersitial4.85
TestisLeydigCell5.85
TestisSeminiferousTubule4.85
Thalamus5.9
Thymus4.35
Thyroid7.15
Tongue6.3
Tonsil5.6
Trachea4.7
TrigeminalGanglion6.55
Uterus4.55
UterusCorpus5.75
WholeBlood6.3
Wholebrain4.55
colon5.7
pineal_day6.98
pineal_night6.82
retina6.925
small_intestine5.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_11009_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.85 ± 1.01
Basal Forebrain2.83 ± 0.65
Basal Part of Pons3.2 ± 0.7
Cerebellar Cortex2.84 ± 0.71
Cerebellar Nuclei3.21 ± 0.89
Claustrum3.47 ± 0.85
Epithalamus2.45 ± 0.8
Frontal Lobe3.03 ± 0.73
Globus Pallidus2.95 ± 0.84
Hypothalamus2.89 ± 0.63
Insula3.18 ± 0.88
Limbic Lobe3.61 ± 0.94
Mesencephalon3.4 ± 0.9
Myelencephalon3.32 ± 0.77
Occipital Lobe4.11 ± 0.96
Parietal Lobe3.72 ± 0.82
Pontine Tegmentum3.36 ± 0.83
Striatum2.81 ± 1.02
Subthalamus2.82 ± 0.76
Temporal Lobe3.48 ± 0.63
Thalamus3.63 ± 0.71
White Matter2.26 ± 0.45
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cntn5CBCerebellum2.68
3.29
Cntn5CTXCerebral cortex20.09
14.57
Cntn5HIPHippocampal region4.98
4.73
Cntn5HPFHippocampal formation8.33
7.12
Cntn5HYHypothalamus9.7
6.97
Cntn5LSXLateral septal complex1.5
1.62
Cntn5MBMidbrain11.49
8.98
Cntn5MYMedulla8.81
7.96
Cntn5OLFOlfactory bulb36.58
30.99
Cntn5PPons8.81
8.06
Cntn5PALPallidum9.33
7.31
Cntn5RHPRetrohippocampal region14.39
10.75
Cntn5sAMYStriatum-like amygdalar nuclei12.98
9
Cntn5STRStriatum13.88
9.4
Cntn5STRdStriatum dorsal region15.66
10.59
Cntn5STRvStriatum ventral region13.61
8.58
Cntn5THThalamus10.36
7.91
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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