Annotation Detail for CSNK1G1
Basic Information Top
| Gene Symbol: | CSNK1G1 ( - ) |
|---|---|
| Gene Full Name: | casein kinase 1, gamma 1 |
| Band: | 15q22.31 |
| Quick Links | Entrez ID:53944; OMIM: 606274; Uniprot ID:KC1G1_HUMAN; ENSEMBL ID: ENSG00000169118; HGNC ID: 2454 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.646508
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 28 / 564012 | 49 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 55 / 1939121 | 28 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 9 / 119369 | 75 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 118 / 3360307 | 35 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 8 / 125680 | 63 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 29 / 1100989 | 26 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 12 / 336974 | 35 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 19 / 153271 | 123 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 33 / 330442 | 99 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 2 / 51780 | 38 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 221673_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 6.25 | |
| Adipocyte | 3.75 | |
| AdrenalCortex | 4.05 | |
| Adrenalgland | 3.2 | |
| Amygdala | 3.95 | |
| Appendix | 4 | |
| AtrioventricularNode | 2.9 | |
| BDCA4+_DentriticCells | 4.2 | |
| Bonemarrow | 3.85 | |
| BronchialEpithelialCells | 3.75 | |
| CD105+_Endothelial | 3.85 | |
| CD14+_Monocytes | 4.1 | |
| CD19+_BCells(neg._sel.) | 4.15 | |
| CD33+_Myeloid | 5 | |
| CD34+ | 4.9 | |
| CD4+_Tcells | 4.6 | |
| CD56+_NKCells | 4.7 | |
| CD71+_EarlyErythroid | 5.05 | |
| CD8+_Tcells | 5.3 | |
| CardiacMyocytes | 5.1 | |
| Caudatenucleus | 3.35 | |
| Cerebellum | 3.1 | |
| CerebellumPeduncles | 4.4 | |
| CiliaryGanglion | 2.8 | |
| CingulateCortex | 3.9 | |
| Colorectaladenocarcinoma | 4.2 | |
| DorsalRootGanglion | 2.95 | |
| FetalThyroid | 3.75 | |
| Fetalbrain | 3.7 | |
| Fetalliver | 3.3 | |
| Fetallung | 3.05 | |
| GlobusPallidus | 2.85 | |
| Heart | 6.45 | |
| Hypothalamus | 4.15 | |
| Kidney | 3.05 | |
| Leukemia_chronicMyelogenousK-562 | 3.45 | |
| Leukemia_promyelocytic-HL-60 | 3.35 | |
| Leukemialymphoblastic(MOLT-4) | 3.05 | |
| Liver | 5.15 | |
| Lung | 4.15 | |
| Lymphnode | 3.2 | |
| Lymphoma_burkitts(Daudi) | 4.85 | |
| Lymphoma_burkitts(Raji) | 6.4 | |
| MedullaOblongata | 3.35 | |
| OccipitalLobe | 3.35 | |
| OlfactoryBulb | 3 | |
| Ovary | 2.55 | |
| Pancreas | 3.05 | |
| PancreaticIslet | 4.85 | |
| ParietalLobe | 4 | |
| Pituitary | 4.4 | |
| Placenta | 3.9 | |
| Pons | 5.4 | |
| PrefrontalCortex | 5.25 | |
| Prostate | 4.45 | |
| Salivarygland | 3.1 | |
| SkeletalMuscle | 4.45 | |
| Skin | 3.15 | |
| SmoothMuscle | 4.25 | |
| Spinalcord | 4.1 | |
| SubthalamicNucleus | 3.5 | |
| SuperiorCervicalGanglion | 4.85 | |
| TemporalLobe | 3.55 | |
| Testis | 11.15 | |
| TestisGermCell | 36.6 | |
| TestisIntersitial | 22.85 | |
| TestisLeydigCell | 15.55 | |
| TestisSeminiferousTubule | 15.45 | |
| Thalamus | 3.95 | |
| Thymus | 3.05 | |
| Thyroid | 4.8 | |
| Tongue | 3.8 | |
| Tonsil | 5.45 | |
| Trachea | 3.15 | |
| TrigeminalGanglion | 4.15 | |
| Uterus | 3.05 | |
| UterusCorpus | 3.4 | |
| WholeBlood | 4.15 | |
| Wholebrain | 3.2 | |
| colon | 3.85 | |
| pineal_day | 4.78 | |
| pineal_night | 4.66 | |
| retina | 4.55 | |
| small_intestine | 3.7 | |
- Probe name: A_23_P14841
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.73 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.32 ± 0.27 | |
| Basal Part of Pons | 4.04 ± 0.51 | |
| Cerebellar Cortex | 4.44 ± 0.36 | |
| Cerebellar Nuclei | 3.77 ± 0.34 | |
| Claustrum | 4.48 ± 0.71 | |
| Epithalamus | 4.28 ± 0.34 | |
| Frontal Lobe | 4.33 ± 0.51 | |
| Globus Pallidus | 3.54 ± 0.48 | |
| Hypothalamus | 4.01 ± 0.37 | |
| Insula | 4.35 ± 0.36 | |
| Limbic Lobe | 4.71 ± 0.52 | |
| Mesencephalon | 4.29 ± 0.55 | |
| Myelencephalon | 4.22 ± 0.52 | |
| Occipital Lobe | 4.28 ± 0.4 | |
| Parietal Lobe | 4.24 ± 0.53 | |
| Pontine Tegmentum | 4.38 ± 0.56 | |
| Striatum | 4.48 ± 0.44 | |
| Subthalamus | 3.93 ± 0.25 | |
| Temporal Lobe | 4.34 ± 0.55 | |
| Thalamus | 3.89 ± 0.53 | |
| White Matter | 3.97 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Csnk1g1 | CB | Cerebellum | 13.89 | |
| 14.17 | | |||
| Csnk1g1 | CTX | Cerebral cortex | 68.55 | |
| 46.81 | | |||
| Csnk1g1 | HIP | Hippocampal region | 44.64 | |
| 62.96 | | |||
| Csnk1g1 | HPF | Hippocampal formation | 47.61 | |
| 51.17 | | |||
| Csnk1g1 | HY | Hypothalamus | 14.81 | |
| 10.25 | | |||
| Csnk1g1 | LSX | Lateral septal complex | 70.52 | |
| 49.12 | | |||
| Csnk1g1 | MB | Midbrain | 22.37 | |
| 17.23 | | |||
| Csnk1g1 | MY | Medulla | 18.27 | |
| 16.25 | | |||
| Csnk1g1 | OLF | Olfactory bulb | 59.18 | |
| 44.07 | | |||
| Csnk1g1 | P | Pons | 21.26 | |
| 18.37 | | |||
| Csnk1g1 | PAL | Pallidum | 25.05 | |
| 18.89 | | |||
| Csnk1g1 | RHP | Retrohippocampal region | 51.83 | |
| 37.77 | | |||
| Csnk1g1 | sAMY | Striatum-like amygdalar nuclei | 30.02 | |
| 21.66 | | |||
| Csnk1g1 | STR | Striatum | 54.16 | |
| 36.46 | | |||
| Csnk1g1 | STRd | Striatum dorsal region | 56.81 | |
| 38.5 | | |||
| Csnk1g1 | STRv | Striatum ventral region | 53.36 | |
| 34.11 | | |||
| Csnk1g1 | TH | Thalamus | 34.42 | |
| 26.02 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00006712 | 14 | 295 | 308 | RLDFFEKPDYEYLR | Peptide Atlas |