Annotation Detail for CPSF2
Basic Information Top
| Gene Symbol: | CPSF2 ( CPSF100,KIAA1367 ) |
|---|---|
| Gene Full Name: | cleavage and polyadenylation specific factor 2, 100kDa |
| Band: | 14q32.12 |
| Quick Links | Entrez ID:53981; OMIM: 606028; Uniprot ID:CPSF2_HUMAN; ENSEMBL ID: ENSG00000165934; HGNC ID: 2325 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.657632
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 23 / 564012 | 40 | |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 86 / 1939121 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 22 / 263845 | 83 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 11 / 136302 | 80 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 129 / 3360307 | 38 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 7 / 125191 | 55 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 5 / 40015 | 124 | |
| bladder | 3 / 29757 | 100 | |
| blood | 4 / 123478 | 32 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 43 / 1100989 | 39 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 4 / 24145 | 165 | |
| liver | 7 / 207743 | 33 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 19 / 280825 | 67 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 35 / 330442 | 105 | |
| thymus | 9 / 81131 | 110 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 8 / 52413 | 152 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 12 / 232878 | 51 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P99837
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.04 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.12 ± 0.22 | |
| Basal Part of Pons | 5.9 ± 0.22 | |
| Cerebellar Cortex | 6.01 ± 0.2 | |
| Cerebellar Nuclei | 6.39 ± 0.31 | |
| Claustrum | 6.2 ± 0.42 | |
| Epithalamus | 6.44 ± 0.16 | |
| Frontal Lobe | 6.16 ± 0.28 | |
| Globus Pallidus | 6.75 ± 0.26 | |
| Hypothalamus | 6.08 ± 0.14 | |
| Insula | 6.15 ± 0.31 | |
| Limbic Lobe | 6.04 ± 0.29 | |
| Mesencephalon | 6.22 ± 0.31 | |
| Myelencephalon | 6.14 ± 0.29 | |
| Occipital Lobe | 6.1 ± 0.24 | |
| Parietal Lobe | 6.09 ± 0.25 | |
| Pontine Tegmentum | 6.17 ± 0.32 | |
| Striatum | 6.23 ± 0.27 | |
| Subthalamus | 6.18 ± 0.08 | |
| Temporal Lobe | 6.11 ± 0.25 | |
| Thalamus | 6.12 ± 0.27 | |
| White Matter | 6.81 ± 0.12 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cpsf2 | CB | Cerebellum | 41.79 | |
| 69.99 | | |||
| Cpsf2 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Cpsf2 | HIP | Hippocampal region | 71.36 | |
| 100 | | |||
| Cpsf2 | HPF | Hippocampal formation | 75.18 | |
| 100 | | |||
| Cpsf2 | HY | Hypothalamus | 100 | |
| 100 | | |||
| Cpsf2 | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| Cpsf2 | MB | Midbrain | 100 | |
| 100 | | |||
| Cpsf2 | MY | Medulla | 100 | |
| 100 | | |||
| Cpsf2 | OLF | Olfactory bulb | 87.6 | |
| 96.21 | | |||
| Cpsf2 | P | Pons | 100 | |
| 100 | | |||
| Cpsf2 | PAL | Pallidum | 90.2 | |
| 100 | | |||
| Cpsf2 | RHP | Retrohippocampal region | 81.78 | |
| 84.09 | | |||
| Cpsf2 | sAMY | Striatum-like amygdalar nuclei | 74.82 | |
| 81.99 | | |||
| Cpsf2 | STR | Striatum | 80.29 | |
| 72.23 | | |||
| Cpsf2 | STRd | Striatum dorsal region | 69.74 | |
| 59.29 | | |||
| Cpsf2 | STRv | Striatum ventral region | 98.54 | |
| 83.12 | | |||
| Cpsf2 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CPSF2_HUMAN_552 | 8 | 552 | 559 | IINQMKPR | PRIDE |
| PAp00003439 | 13 | 307 | 319 | HLSLCHGLSDLAR | Peptide Atlas |