Annotation Detail for C21orf58
Basic Information Top
| Gene Symbol: | C21orf58 ( - ) |
|---|---|
| Gene Full Name: | chromosome 21 open reading frame 58 |
| Band: | 21q22.3 |
| Quick Links | Entrez ID:54058; OMIM: NA; Uniprot ID:CU058_HUMAN; ENSEMBL ID: ENSG00000160298; HGNC ID: 1300 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.236572
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 25 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 4 / 34366 | 116 |  |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 39 / 3360307 | 11 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 4 / 336974 | 11 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 10 / 330442 | 30 | |
| thymus | 14 / 81131 | 172 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_8116_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.35 ± 1.11 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.74 ± 0.32 | |
| Basal Part of Pons | 1.59 ± 0.52 | |
| Cerebellar Cortex | 2.24 ± 0.5 | |
| Cerebellar Nuclei | 2.21 ± 0.64 | |
| Claustrum | 2.51 ± 0.72 | |
| Epithalamus | 1.76 ± 0.64 | |
| Frontal Lobe | 1.78 ± 0.7 | |
| Globus Pallidus | 1.79 ± 0.71 | |
| Hypothalamus | 1.72 ± 0.73 | |
| Insula | 1.95 ± 0.75 | |
| Limbic Lobe | 1.81 ± 0.65 | |
| Mesencephalon | 2.08 ± 0.69 | |
| Myelencephalon | 1.93 ± 0.68 | |
| Occipital Lobe | 2.17 ± 0.71 | |
| Parietal Lobe | 1.91 ± 0.7 | |
| Pontine Tegmentum | 1.93 ± 0.72 | |
| Striatum | 2.02 ± 0.73 | |
| Subthalamus | 2.08 ± 0.82 | |
| Temporal Lobe | 1.82 ± 0.77 | |
| Thalamus | 1.9 ± 0.62 | |
| White Matter | 2.13 ± 0.12 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2610028H24Rik | CB | Cerebellum | 100 | |
| 100 | | |||
| 2610028H24Rik | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| 2610028H24Rik | HIP | Hippocampal region | 100 | |
| 100 | | |||
| 2610028H24Rik | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| 2610028H24Rik | HY | Hypothalamus | 100 | |
| 100 | | |||
| 2610028H24Rik | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| 2610028H24Rik | MB | Midbrain | 100 | |
| 100 | | |||
| 2610028H24Rik | MY | Medulla | 100 | |
| 100 | | |||
| 2610028H24Rik | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| 2610028H24Rik | P | Pons | 100 | |
| 100 | | |||
| 2610028H24Rik | PAL | Pallidum | 100 | |
| 100 | | |||
| 2610028H24Rik | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| 2610028H24Rik | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| 2610028H24Rik | STR | Striatum | 100 | |
| 100 | | |||
| 2610028H24Rik | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| 2610028H24Rik | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| 2610028H24Rik | TH | Thalamus | 100 | |
| 100 | |