AutismKB 2.0

Annotation Detail for UBL3


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Basic Information Top
Gene Symbol:UBL3 ( DKFZp434K151,FLJ32018,HCG-1,PNSC1 )
Gene Full Name: ubiquitin-like 3
Band: 13q12.3
Quick LinksEntrez ID:5412; OMIM: 604711; Uniprot ID:UBL3_HUMAN; ENSEMBL ID: ENSG00000122042; HGNC ID: 12504
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst1 / 6231916
fetus48 / 56401285
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult139 / 193912171
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma5 / 17475286
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor3 / 11424626
esophageal tumor1 / 1729057
gastrointestinal tumor5 / 11936941
germ cell tumor13 / 26384549
glioma4 / 10688337
head and neck tumor10 / 13630273
kidney tumor7 / 68959101
leukemia1 / 9584210
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia9 / 9725092
normal325 / 336030796
ovarian tumor0 / 766820 
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor14 / 124949112
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor6 / 9025766
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland1 / 3319730
ascites0 / 400150 
bladder3 / 29757100
blood5 / 12347840
bone0 / 716550 
bone marrow1 / 4880120
brain180 / 1100989163
cervix2 / 4817141
connective tissue9 / 14925560
ear3 / 16212185
embryonic tissue4 / 21572218
esophagus1 / 2020949
eye17 / 21105480
heart1 / 8962611
intestine17 / 23447272
kidney22 / 211777103
larynx0 / 241450 
liver9 / 20774343
lung30 / 33697489
lymph1 / 4427022
lymph node4 / 9161043
mammary gland9 / 15327158
mouth10 / 67052149
muscle6 / 10771555
nerve1 / 1576863
ovary0 / 1020510 
pancreas21 / 21481297
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta29 / 280825103
prostate9 / 18934547
salivary gland0 / 201550 
skin31 / 210574147
spleen0 / 539520 
stomach7 / 9661972
testis33 / 33044299
thymus6 / 8113173
thyroid4 / 4747384
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord0 / 136800 
uterus17 / 23287872
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 201534_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts13.05
Adipocyte28.1
AdrenalCortex45.15
Adrenalgland27.25
Amygdala124.2
Appendix36.35
AtrioventricularNode27.4
BDCA4+_DentriticCells69.1
Bonemarrow24.95
BronchialEpithelialCells22.2
CD105+_Endothelial23.25
CD14+_Monocytes89.65
CD19+_BCells(neg._sel.)40.55
CD33+_Myeloid69.25
CD34+28.3
CD4+_Tcells32.9
CD56+_NKCells63.3
CD71+_EarlyErythroid20.05
CD8+_Tcells51.75
CardiacMyocytes66.9
Caudatenucleus71.65
Cerebellum27.95
CerebellumPeduncles49.35
CiliaryGanglion26.65
CingulateCortex34.7
Colorectaladenocarcinoma25.8
DorsalRootGanglion21.65
FetalThyroid41.35
Fetalbrain46.55
Fetalliver23.25
Fetallung21.75
GlobusPallidus29.55
Heart45.8
Hypothalamus67.8
Kidney28.55
Leukemia_chronicMyelogenousK-56220
Leukemia_promyelocytic-HL-6021.25
Leukemialymphoblastic(MOLT-4)16.1
Liver47.75
Lung21.4
Lymphnode22.95
Lymphoma_burkitts(Daudi)33.8
Lymphoma_burkitts(Raji)42.15
MedullaOblongata24.8
OccipitalLobe92.35
OlfactoryBulb17.15
Ovary18.65
Pancreas26.35
PancreaticIslet40.15
ParietalLobe47.05
Pituitary79.35
Placenta22.1
Pons35.75
PrefrontalCortex89.95
Prostate30.35
Salivarygland28.6
SkeletalMuscle41.9
Skin30.4
SmoothMuscle35.15
Spinalcord76.6
SubthalamicNucleus44.3
SuperiorCervicalGanglion42.2
TemporalLobe31.9
Testis21.15
TestisGermCell24.35
TestisIntersitial26.95
TestisLeydigCell35.35
TestisSeminiferousTubule24.3
Thalamus46.85
Thymus16.6
Thyroid54.55
Tongue29.95
Tonsil30
Trachea27.8
TrigeminalGanglion36.55
Uterus51.45
UterusCorpus36.3
WholeBlood80.85
Wholebrain58.55
colon101.25
pineal_day160.14
pineal_night136.4
retina70.1
small_intestine69.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P140029
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala10.27 ± 0.4
Basal Forebrain10.55 ± 0.2
Basal Part of Pons10.1 ± 0.23
Cerebellar Cortex10.14 ± 0.19
Cerebellar Nuclei10.98 ± 0.27
Claustrum10.22 ± 0.36
Epithalamus10.79 ± 0.53
Frontal Lobe10.38 ± 0.35
Globus Pallidus11.02 ± 0.21
Hypothalamus10.32 ± 0.39
Insula10.18 ± 0.22
Limbic Lobe10.54 ± 0.45
Mesencephalon10.61 ± 0.33
Myelencephalon10.5 ± 0.33
Occipital Lobe10.86 ± 0.35
Parietal Lobe10.57 ± 0.27
Pontine Tegmentum10.64 ± 0.33
Striatum11.25 ± 0.32
Subthalamus10.87 ± 0.13
Temporal Lobe10.26 ± 0.29
Thalamus10.46 ± 0.23
White Matter11.47 ± 0.2
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ubl3CBCerebellum38.07
62.41
Ubl3CTXCerebral cortex37.95
28.96
Ubl3HIPHippocampal region58.66
52.01
Ubl3HPFHippocampal formation51.89
43.94
Ubl3HYHypothalamus25.33
19.78
Ubl3LSXLateral septal complex29.93
19.08
Ubl3MBMidbrain23.28
23.66
Ubl3MYMedulla41.05
49.97
Ubl3OLFOlfactory bulb87.47
51.25
Ubl3PPons40.88
46.16
Ubl3PALPallidum32.38
31.13
Ubl3RHPRetrohippocampal region41.31
32.31
Ubl3sAMYStriatum-like amygdalar nuclei29.98
22.84
Ubl3STRStriatum68.38
46.97
Ubl3STRdStriatum dorsal region89.17
61.02
Ubl3STRvStriatum ventral region77.88
50.36
Ubl3THThalamus24.7
21.67
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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