Annotation Detail for PODXL
Basic Information Top
| Gene Symbol: | PODXL ( Gp200,MGC138240,PC,PCLP,PCLP-1 ) |
|---|---|
| Gene Full Name: | podocalyxin-like |
| Band: | 7q32.3 |
| Quick Links | Entrez ID:5420; OMIM: 602632; Uniprot ID:PODXL_HUMAN; ENSEMBL ID: ENSG00000128567; HGNC ID: 9171 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.719018
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 31 / 70761 | 438 |  |
| blastocyst | 76 / 62319 | 1219 |  |
| fetus | 36 / 564012 | 63 |  |
| neonate | 2 / 31097 | 64 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 178 / 1939121 | 91 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 9 / 94178 | 95 | |
| cervical tumor | 5 / 34366 | 145 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 17 / 114246 | 148 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 60 / 263845 | 227 | |
| glioma | 13 / 106883 | 121 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 7 / 96359 | 72 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 283 / 3360307 | 84 | |
| ovarian tumor | 11 / 76682 | 143 | |
| pancreatic tumor | 5 / 104616 | 47 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 |  |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 35 / 90257 | 387 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 4 / 13106 | 305 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 12 / 71655 | 167 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 47 / 1100989 | 42 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 119 / 215722 | 551 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 14 / 211054 | 66 | |
| heart | 8 / 89626 | 89 | |
| intestine | 26 / 234472 | 110 | |
| kidney | 19 / 211777 | 89 | |
| larynx | 4 / 24145 | 165 | |
| liver | 8 / 207743 | 38 | |
| lung | 35 / 336974 | 103 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 18 / 107715 | 167 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 36 / 102051 | 352 | |
| pancreas | 19 / 214812 | 88 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 5 / 96619 | 51 | |
| testis | 32 / 330442 | 96 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 2 / 13680 | 146 | |
| uterus | 45 / 232878 | 193 | |
| vascular | 8 / 51780 | 154 | |
- Probe name: CUST_15525_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.28 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.06 ± 0.3 | |
| Basal Part of Pons | 5.77 ± 0.39 | |
| Cerebellar Cortex | 5.76 ± 0.36 | |
| Cerebellar Nuclei | 6.93 ± 0.43 | |
| Claustrum | 6.12 ± 0.83 | |
| Epithalamus | 5.59 ± 0.59 | |
| Frontal Lobe | 6.16 ± 0.5 | |
| Globus Pallidus | 7.13 ± 0.27 | |
| Hypothalamus | 5.75 ± 0.62 | |
| Insula | 6.26 ± 0.33 | |
| Limbic Lobe | 6.52 ± 0.45 | |
| Mesencephalon | 6.38 ± 0.48 | |
| Myelencephalon | 6.34 ± 0.51 | |
| Occipital Lobe | 6.49 ± 0.45 | |
| Parietal Lobe | 6.27 ± 0.51 | |
| Pontine Tegmentum | 6.38 ± 0.57 | |
| Striatum | 6.79 ± 0.42 | |
| Subthalamus | 6.4 ± 0.37 | |
| Temporal Lobe | 6.2 ± 0.44 | |
| Thalamus | 6.26 ± 0.44 | |
| White Matter | 6.58 ± 0.49 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00000926 | 12 | 312 | 323 | CEDLETQTQSEK | Peptide Atlas |