Annotation Detail for POLRMT
Basic Information Top
| Gene Symbol: | POLRMT ( APOLMT,MTRNAP,MTRPOL,h-mtRPOL ) |
|---|---|
| Gene Full Name: | polymerase (RNA) mitochondrial (DNA directed) |
| Band: | 19p13.3 |
| Quick Links | Entrez ID:5442; OMIM: 601778; Uniprot ID:RPOM_HUMAN; ENSEMBL ID: ENSG00000099821; HGNC ID: 9200 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.254113
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 6 / 70761 | 84 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 7 / 564012 | 12 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 42 / 1939121 | 21 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 5 / 68959 | 72 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 5 / 71755 | 69 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 91 / 3360307 | 27 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 16 / 215722 | 74 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 13 / 211054 | 61 | |
| heart | 2 / 89626 | 22 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 7 / 336974 | 20 | |
| lymph | 3 / 44270 | 67 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 8 / 102051 | 78 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 9 / 330442 | 27 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 203782_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 22.25 | |
| Adipocyte | 3.9 | |
| AdrenalCortex | 4.05 | |
| Adrenalgland | 3.65 | |
| Amygdala | 4.4 | |
| Appendix | 4 | |
| AtrioventricularNode | 2.9 | |
| BDCA4+_DentriticCells | 26.55 | |
| Bonemarrow | 3.9 | |
| BronchialEpithelialCells | 5.25 | |
| CD105+_Endothelial | 4.75 | |
| CD14+_Monocytes | 5.9 | |
| CD19+_BCells(neg._sel.) | 17.7 | |
| CD33+_Myeloid | 5.25 | |
| CD34+ | 19.6 | |
| CD4+_Tcells | 21.45 | |
| CD56+_NKCells | 11.65 | |
| CD71+_EarlyErythroid | 3.65 | |
| CD8+_Tcells | 27.85 | |
| CardiacMyocytes | 4.95 | |
| Caudatenucleus | 4.25 | |
| Cerebellum | 3.35 | |
| CerebellumPeduncles | 4.65 | |
| CiliaryGanglion | 2.75 | |
| CingulateCortex | 6.95 | |
| Colorectaladenocarcinoma | 7.15 | |
| DorsalRootGanglion | 2.9 | |
| FetalThyroid | 6.65 | |
| Fetalbrain | 3.8 | |
| Fetalliver | 3.5 | |
| Fetallung | 3.35 | |
| GlobusPallidus | 2.8 | |
| Heart | 74.7 | |
| Hypothalamus | 5.9 | |
| Kidney | 3.25 | |
| Leukemia_chronicMyelogenousK-562 | 24.4 | |
| Leukemia_promyelocytic-HL-60 | 3.8 | |
| Leukemialymphoblastic(MOLT-4) | 20.05 | |
| Liver | 35.65 | |
| Lung | 7.7 | |
| Lymphnode | 4.3 | |
| Lymphoma_burkitts(Daudi) | 5.3 | |
| Lymphoma_burkitts(Raji) | 14.3 | |
| MedullaOblongata | 3.8 | |
| OccipitalLobe | 3.65 | |
| OlfactoryBulb | 3.2 | |
| Ovary | 2.55 | |
| Pancreas | 3.1 | |
| PancreaticIslet | 4.4 | |
| ParietalLobe | 4.2 | |
| Pituitary | 4.55 | |
| Placenta | 4.05 | |
| Pons | 3.8 | |
| PrefrontalCortex | 14.4 | |
| Prostate | 4.75 | |
| Salivarygland | 3.1 | |
| SkeletalMuscle | 4.35 | |
| Skin | 2.9 | |
| SmoothMuscle | 4.45 | |
| Spinalcord | 4.4 | |
| SubthalamicNucleus | 3.7 | |
| SuperiorCervicalGanglion | 4.45 | |
| TemporalLobe | 3.75 | |
| Testis | 172.55 | |
| TestisGermCell | 39.7 | |
| TestisIntersitial | 13.2 | |
| TestisLeydigCell | 13.95 | |
| TestisSeminiferousTubule | 33.4 | |
| Thalamus | 4.55 | |
| Thymus | 10.65 | |
| Thyroid | 7.1 | |
| Tongue | 3.65 | |
| Tonsil | 3.9 | |
| Trachea | 3.2 | |
| TrigeminalGanglion | 3.75 | |
| Uterus | 3.7 | |
| UterusCorpus | 3.45 | |
| WholeBlood | 5.25 | |
| Wholebrain | 19.15 | |
| colon | 3.95 | |
| pineal_day | 13.64 | |
| pineal_night | 12.68 | |
| retina | 5.65 | |
| small_intestine | 3.8 | |
- Probe name: CUST_198_PI417507815
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7 ± 0.37 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.05 ± 0.34 | |
| Basal Part of Pons | 7.3 ± 0.24 | |
| Cerebellar Cortex | 7 ± 0.22 | |
| Cerebellar Nuclei | 7.17 ± 0.21 | |
| Claustrum | 6.82 ± 0.36 | |
| Epithalamus | 6.82 ± 0.28 | |
| Frontal Lobe | 7.28 ± 0.36 | |
| Globus Pallidus | 6.87 ± 0.28 | |
| Hypothalamus | 7.09 ± 0.29 | |
| Insula | 7.13 ± 0.33 | |
| Limbic Lobe | 7.14 ± 0.38 | |
| Mesencephalon | 7.1 ± 0.4 | |
| Myelencephalon | 7.17 ± 0.36 | |
| Occipital Lobe | 6.9 ± 0.38 | |
| Parietal Lobe | 7.18 ± 0.31 | |
| Pontine Tegmentum | 7.11 ± 0.31 | |
| Striatum | 7.21 ± 0.45 | |
| Subthalamus | 7.05 ± 0.26 | |
| Temporal Lobe | 7.21 ± 0.3 | |
| Thalamus | 7.33 ± 0.37 | |
| White Matter | 7.03 ± 0.42 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Polrmt | CB | Cerebellum | 12.76 | |
| 12.24 | | |||
| Polrmt | CTX | Cerebral cortex | 10.6 | |
| 7.58 | | |||
| Polrmt | HIP | Hippocampal region | 9.88 | |
| 9 | | |||
| Polrmt | HPF | Hippocampal formation | 9.6 | |
| 7.92 | | |||
| Polrmt | HY | Hypothalamus | 0.9 | |
| 0.59 | | |||
| Polrmt | LSX | Lateral septal complex | 0.21 | |
| 0.2 | | |||
| Polrmt | MB | Midbrain | 2.87 | |
| 2.71 | | |||
| Polrmt | MY | Medulla | 8.48 | |
| 8.55 | | |||
| Polrmt | OLF | Olfactory bulb | 8.53 | |
| 5.44 | | |||
| Polrmt | P | Pons | 6.49 | |
| 7.32 | | |||
| Polrmt | PAL | Pallidum | 1.28 | |
| 1.09 | | |||
| Polrmt | RHP | Retrohippocampal region | 9.33 | |
| 6.53 | | |||
| Polrmt | sAMY | Striatum-like amygdalar nuclei | 1.22 | |
| 1.08 | | |||
| Polrmt | STR | Striatum | 1.56 | |
| 1.25 | | |||
| Polrmt | STRd | Striatum dorsal region | 1.9 | |
| 1.55 | | |||
| Polrmt | STRv | Striatum ventral region | 0.8 | |
| 0.56 | | |||
| Polrmt | TH | Thalamus | 8.21 | |
| 5.99 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00002713 | 30 | 725 | 754 | GCPQLGVPAPPSEAPQPPEAHLPHSAAPAR | Peptide Atlas |
| RPOM_HUMAN_309 | 10 | 309 | 318 | QDQDAGTIER | PRIDE |
| RPOM_HUMAN_41 | 13 | 41 | 53 | SSSASPQEQDQDR | PRIDE |