Annotation Detail for SSH1
Basic Information Top
| Gene Symbol: | SSH1 ( FLJ21928,FLJ38102,KIAA1298,SSH1L ) |
|---|---|
| Gene Full Name: | slingshot homolog 1 (Drosophila) |
| Band: | 12q24.11 |
| Quick Links | Entrez ID:54434; OMIM: 606778; Uniprot ID:SSH1_HUMAN; ENSEMBL ID: ENSG00000084112; HGNC ID: 30579 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.199763
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 3 / 62319 | 48 |  |
| fetus | 35 / 564012 | 62 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 94 / 1939121 | 48 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 7 / 82823 | 84 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 9 / 263845 | 34 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 5 / 103127 | 48 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 161 / 3360307 | 47 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 21 / 124949 | 168 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 12 / 90257 | 132 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 33 / 1100989 | 29 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 33 / 211054 | 156 | |
| heart | 3 / 89626 | 33 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 17 / 336974 | 50 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 10 / 214812 | 46 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 23 / 210574 | 109 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 11 / 330442 | 33 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 6 / 16999 | 352 |  |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 21 / 232878 | 90 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 221752_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 94.3 | |
| Adipocyte | 35.85 | |
| AdrenalCortex | 27.3 | |
| Adrenalgland | 22.45 | |
| Amygdala | 35.8 | |
| Appendix | 28.8 | |
| AtrioventricularNode | 21.9 | |
| BDCA4+_DentriticCells | 32.95 | |
| Bonemarrow | 23.25 | |
| BronchialEpithelialCells | 58.65 | |
| CD105+_Endothelial | 23.8 | |
| CD14+_Monocytes | 46.5 | |
| CD19+_BCells(neg._sel.) | 40.25 | |
| CD33+_Myeloid | 72.45 | |
| CD34+ | 37.2 | |
| CD4+_Tcells | 33 | |
| CD56+_NKCells | 199.85 | |
| CD71+_EarlyErythroid | 18.95 | |
| CD8+_Tcells | 34.35 | |
| CardiacMyocytes | 68.75 | |
| Caudatenucleus | 21.7 | |
| Cerebellum | 55.8 | |
| CerebellumPeduncles | 37.4 | |
| CiliaryGanglion | 18.55 | |
| CingulateCortex | 26.75 | |
| Colorectaladenocarcinoma | 56.25 | |
| DorsalRootGanglion | 20.5 | |
| FetalThyroid | 32.25 | |
| Fetalbrain | 26.65 | |
| Fetalliver | 12.35 | |
| Fetallung | 27.7 | |
| GlobusPallidus | 19.25 | |
| Heart | 38 | |
| Hypothalamus | 37.9 | |
| Kidney | 22.1 | |
| Leukemia_chronicMyelogenousK-562 | 18.2 | |
| Leukemia_promyelocytic-HL-60 | 21.35 | |
| Leukemialymphoblastic(MOLT-4) | 16.25 | |
| Liver | 35.45 | |
| Lung | 76.1 | |
| Lymphnode | 27.3 | |
| Lymphoma_burkitts(Daudi) | 31.35 | |
| Lymphoma_burkitts(Raji) | 37.05 | |
| MedullaOblongata | 22.2 | |
| OccipitalLobe | 24.95 | |
| OlfactoryBulb | 56.6 | |
| Ovary | 18.25 | |
| Pancreas | 21.15 | |
| PancreaticIslet | 46.55 | |
| ParietalLobe | 28.7 | |
| Pituitary | 28.1 | |
| Placenta | 29.45 | |
| Pons | 24.7 | |
| PrefrontalCortex | 49.2 | |
| Prostate | 42.15 | |
| Salivarygland | 18.7 | |
| SkeletalMuscle | 39.8 | |
| Skin | 18.05 | |
| SmoothMuscle | 118.6 | |
| Spinalcord | 29.1 | |
| SubthalamicNucleus | 24.95 | |
| SuperiorCervicalGanglion | 30.7 | |
| TemporalLobe | 24.55 | |
| Testis | 22.15 | |
| TestisGermCell | 28.45 | |
| TestisIntersitial | 22 | |
| TestisLeydigCell | 25.75 | |
| TestisSeminiferousTubule | 27.05 | |
| Thalamus | 25.1 | |
| Thymus | 23.55 | |
| Thyroid | 35.4 | |
| Tongue | 26.05 | |
| Tonsil | 27.1 | |
| Trachea | 22 | |
| TrigeminalGanglion | 30.55 | |
| Uterus | 52.2 | |
| UterusCorpus | 38.15 | |
| WholeBlood | 73.6 | |
| Wholebrain | 37.65 | |
| colon | 24.15 | |
| pineal_day | 87.7 | |
| pineal_night | 89.54 | |
| retina | 51.9 | |
| small_intestine | 23.25 | |
- Probe name: A_23_P333802
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.84 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.72 ± 0.32 | |
| Basal Part of Pons | 5.2 ± 0.47 | |
| Cerebellar Cortex | 5.42 ± 0.22 | |
| Cerebellar Nuclei | 4.71 ± 0.47 | |
| Claustrum | 4.67 ± 0.53 | |
| Epithalamus | 4.38 ± 0.68 | |
| Frontal Lobe | 4.91 ± 0.5 | |
| Globus Pallidus | 4.07 ± 0.6 | |
| Hypothalamus | 4.74 ± 0.75 | |
| Insula | 5.06 ± 0.38 | |
| Limbic Lobe | 5.07 ± 0.56 | |
| Mesencephalon | 4.88 ± 0.57 | |
| Myelencephalon | 4.86 ± 0.57 | |
| Occipital Lobe | 5.15 ± 0.45 | |
| Parietal Lobe | 5.02 ± 0.61 | |
| Pontine Tegmentum | 4.84 ± 0.62 | |
| Striatum | 4.2 ± 0.46 | |
| Subthalamus | 5.1 ± 0.59 | |
| Temporal Lobe | 5.04 ± 0.43 | |
| Thalamus | 4.89 ± 0.53 | |
| White Matter | 3.19 ± 0.79 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ssh1 | CB | Cerebellum | 34.18 | |
| 41.49 | | |||
| Ssh1 | CTX | Cerebral cortex | 45.1 | |
| 33.64 | | |||
| Ssh1 | HIP | Hippocampal region | 23.41 | |
| 24.56 | | |||
| Ssh1 | HPF | Hippocampal formation | 31.96 | |
| 30.69 | | |||
| Ssh1 | HY | Hypothalamus | 22.76 | |
| 21.41 | | |||
| Ssh1 | LSX | Lateral septal complex | 42.16 | |
| 45.16 | | |||
| Ssh1 | MB | Midbrain | 11.11 | |
| 9.89 | | |||
| Ssh1 | MY | Medulla | 21.86 | |
| 22.07 | | |||
| Ssh1 | OLF | Olfactory bulb | 45.38 | |
| 38.72 | | |||
| Ssh1 | P | Pons | 13.29 | |
| 14.05 | | |||
| Ssh1 | PAL | Pallidum | 29.79 | |
| 27.75 | | |||
| Ssh1 | RHP | Retrohippocampal region | 44.65 | |
| 38.15 | | |||
| Ssh1 | sAMY | Striatum-like amygdalar nuclei | 48.76 | |
| 40.34 | | |||
| Ssh1 | STR | Striatum | 21.5 | |
| 17.79 | | |||
| Ssh1 | STRd | Striatum dorsal region | 14.27 | |
| 10.96 | | |||
| Ssh1 | STRv | Striatum ventral region | 27.68 | |
| 21.7 | | |||
| Ssh1 | TH | Thalamus | 22.23 | |
| 21.04 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00538179 | 24 | 9 | 32 | SPTPSAASSSASNSELEAGSEEDR | Peptide Atlas |