Annotation Detail for SH3TC1
Basic Information Top
| Gene Symbol: | SH3TC1 ( FLJ20356,FLJ32999,FLJ36243,FLJ46394 ) |
|---|---|
| Gene Full Name: | SH3 domain and tetratricopeptide repeats 1 |
| Band: | 4p16.1 |
| Quick Links | Entrez ID:54436; OMIM: NA; Uniprot ID:S3TC1_HUMAN; ENSEMBL ID: ENSG00000125089; HGNC ID: 26009 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.479116
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 3 / 31097 | 96 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 50 / 1939121 | 25 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 91 / 3360307 | 27 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 6 / 123478 | 48 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 20 / 211777 | 94 | |
| larynx | 2 / 24145 | 82 | |
| liver | 2 / 207743 | 9 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 7 / 91610 | 76 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 21 / 214812 | 97 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 3 / 53952 | 55 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 38 / 81131 | 468 |  |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 3 / 13680 | 219 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_13762_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.9 ± 1.03 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.51 ± 0.23 | |
| Basal Part of Pons | 1.18 ± 0.38 | |
| Cerebellar Cortex | 1.36 ± 0.74 | |
| Cerebellar Nuclei | 1.87 ± 0.81 | |
| Claustrum | 2.26 ± 0.79 | |
| Epithalamus | 1.31 ± 0.68 | |
| Frontal Lobe | 1.35 ± 0.64 | |
| Globus Pallidus | 2.06 ± 0.26 | |
| Hypothalamus | 1.55 ± 0.7 | |
| Insula | 1.26 ± 0.45 | |
| Limbic Lobe | 1.52 ± 0.61 | |
| Mesencephalon | 1.68 ± 0.7 | |
| Myelencephalon | 1.55 ± 0.67 | |
| Occipital Lobe | 1.46 ± 0.62 | |
| Parietal Lobe | 1.56 ± 0.77 | |
| Pontine Tegmentum | 1.51 ± 0.67 | |
| Striatum | 1.66 ± 0.58 | |
| Subthalamus | 1.56 ± 0.6 | |
| Temporal Lobe | 1.39 ± 0.7 | |
| Thalamus | 1.44 ± 0.62 | |
| White Matter | 1.87 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sh3tc1 | CB | Cerebellum | 0.58 | |
| 0.93 | | |||
| Sh3tc1 | CTX | Cerebral cortex | 0.73 | |
| 0.69 | | |||
| Sh3tc1 | HIP | Hippocampal region | 0.17 | |
| 0.14 | | |||
| Sh3tc1 | HPF | Hippocampal formation | 0.17 | |
| 0.12 | | |||
| Sh3tc1 | HY | Hypothalamus | 0.27 | |
| 0.42 | | |||
| Sh3tc1 | LSX | Lateral septal complex | 0 | |
| 0 | | |||
| Sh3tc1 | MB | Midbrain | 0.46 | |
| 0.72 | | |||
| Sh3tc1 | MY | Medulla | 1.34 | |
| 1.74 | | |||
| Sh3tc1 | OLF | Olfactory bulb | 1.27 | |
| 1.99 | | |||
| Sh3tc1 | P | Pons | 0.41 | |
| 0.48 | | |||
| Sh3tc1 | PAL | Pallidum | 0.11 | |
| 0.11 | | |||
| Sh3tc1 | RHP | Retrohippocampal region | 0.14 | |
| 0.08 | | |||
| Sh3tc1 | sAMY | Striatum-like amygdalar nuclei | 0.11 | |
| 0.13 | | |||
| Sh3tc1 | STR | Striatum | 0.17 | |
| 0.22 | | |||
| Sh3tc1 | STRd | Striatum dorsal region | 0.12 | |
| 0.12 | | |||
| Sh3tc1 | STRv | Striatum ventral region | 0.09 | |
| 0.04 | | |||
| Sh3tc1 | TH | Thalamus | 0.46 | |
| 0.53 | |