Annotation Detail for SEMA5B
Basic Information Top
| Gene Symbol: | SEMA5B ( FLJ10372,KIAA1445,SEMAG,SemG ) |
|---|---|
| Gene Full Name: | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B |
| Band: | 3q21.1 |
| Quick Links | Entrez ID:54437; OMIM: 609298; Uniprot ID:SEM5B_HUMAN; ENSEMBL ID: ENSG00000082684; HGNC ID: 10737 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.210870
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 8 / 62319 | 128 |  |
| fetus | 25 / 564012 | 44 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 16 / 1939121 | 8 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 11 / 106883 | 102 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 6 / 68959 | 87 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 65 / 3360307 | 19 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 3 / 125680 | 23 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 48 / 1100989 | 43 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_566_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.6 ± 0.56 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.29 ± 0.21 | |
| Basal Part of Pons | 5.67 ± 0.4 | |
| Cerebellar Cortex | 5.5 ± 0.48 | |
| Cerebellar Nuclei | 6.03 ± 0.2 | |
| Claustrum | 6.38 ± 0.73 | |
| Epithalamus | 5.37 ± 0.26 | |
| Frontal Lobe | 5.91 ± 0.41 | |
| Globus Pallidus | 6.2 ± 0.51 | |
| Hypothalamus | 5.63 ± 0.36 | |
| Insula | 5.84 ± 0.61 | |
| Limbic Lobe | 6.54 ± 0.69 | |
| Mesencephalon | 6.03 ± 0.53 | |
| Myelencephalon | 6.03 ± 0.53 | |
| Occipital Lobe | 6.64 ± 0.75 | |
| Parietal Lobe | 6.2 ± 0.53 | |
| Pontine Tegmentum | 6.21 ± 0.53 | |
| Striatum | 6.01 ± 0.67 | |
| Subthalamus | 5.58 ± 0.17 | |
| Temporal Lobe | 6.22 ± 0.48 | |
| Thalamus | 5.69 ± 0.37 | |
| White Matter | 5.89 ± 0.66 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sema5b | CB | Cerebellum | 0.38 | |
| 0.75 | | |||
| Sema5b | CTX | Cerebral cortex | 1.66 | |
| 1.33 | | |||
| Sema5b | HIP | Hippocampal region | 2.27 | |
| 1.93 | | |||
| Sema5b | HPF | Hippocampal formation | 1.67 | |
| 1.27 | | |||
| Sema5b | HY | Hypothalamus | 0.2 | |
| 0.15 | | |||
| Sema5b | LSX | Lateral septal complex | 0.56 | |
| 0.81 | | |||
| Sema5b | MB | Midbrain | 0.36 | |
| 0.34 | | |||
| Sema5b | MY | Medulla | 0.42 | |
| 0.35 | | |||
| Sema5b | OLF | Olfactory bulb | 3.25 | |
| 2.18 | | |||
| Sema5b | P | Pons | 0.53 | |
| 0.46 | | |||
| Sema5b | PAL | Pallidum | 0.81 | |
| 0.81 | | |||
| Sema5b | RHP | Retrohippocampal region | 0.92 | |
| 0.54 | | |||
| Sema5b | sAMY | Striatum-like amygdalar nuclei | 0.5 | |
| 0.39 | | |||
| Sema5b | STR | Striatum | 4.12 | |
| 3.15 | | |||
| Sema5b | STRd | Striatum dorsal region | 4.07 | |
| 3.32 | | |||
| Sema5b | STRv | Striatum ventral region | 7.97 | |
| 4.84 | | |||
| Sema5b | TH | Thalamus | 0.18 | |
| 0.15 | |