Annotation Detail for RBM27
Basic Information Top
| Gene Symbol: | RBM27 ( ARRS1,KIAA1311,Psc1 ) |
|---|---|
| Gene Full Name: | RNA binding motif protein 27 |
| Band: | 5q32 |
| Quick Links | Entrez ID:54439; OMIM: NA; Uniprot ID:RBM27_HUMAN; ENSEMBL ID: ENSG00000091009; HGNC ID: 29243 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.61441
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 64 / 1939121 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 86 / 3360307 | 25 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 8 / 90257 | 88 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 5 / 123478 | 40 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 13 / 211777 | 61 | |
| larynx | 4 / 24145 | 165 | |
| liver | 2 / 207743 | 9 | |
| lung | 16 / 336974 | 47 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 13 / 330442 | 39 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 21 / 232878 | 90 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P92786
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.79 ± 0.25 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.92 ± 0.11 | |
| Basal Part of Pons | 8.85 ± 0.16 | |
| Cerebellar Cortex | 9.19 ± 0.13 | |
| Cerebellar Nuclei | 8.59 ± 0.2 | |
| Claustrum | 8.82 ± 0.4 | |
| Epithalamus | 9.11 ± 0.29 | |
| Frontal Lobe | 8.94 ± 0.26 | |
| Globus Pallidus | 8.87 ± 0.2 | |
| Hypothalamus | 8.95 ± 0.32 | |
| Insula | 9.11 ± 0.19 | |
| Limbic Lobe | 8.83 ± 0.28 | |
| Mesencephalon | 8.92 ± 0.26 | |
| Myelencephalon | 8.9 ± 0.24 | |
| Occipital Lobe | 8.99 ± 0.25 | |
| Parietal Lobe | 9.03 ± 0.2 | |
| Pontine Tegmentum | 8.96 ± 0.25 | |
| Striatum | 8.78 ± 0.22 | |
| Subthalamus | 9.05 ± 0.1 | |
| Temporal Lobe | 8.98 ± 0.2 | |
| Thalamus | 8.95 ± 0.21 | |
| White Matter | 8.99 ± 0.11 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rbm27 | CB | Cerebellum | 10.92 | |
| 11.38 | | |||
| Rbm27 | CTX | Cerebral cortex | 6.82 | |
| 4.98 | | |||
| Rbm27 | HIP | Hippocampal region | 10.55 | |
| 13.13 | | |||
| Rbm27 | HPF | Hippocampal formation | 7.22 | |
| 8.39 | | |||
| Rbm27 | HY | Hypothalamus | 6.78 | |
| 5.58 | | |||
| Rbm27 | LSX | Lateral septal complex | 3.49 | |
| 2.62 | | |||
| Rbm27 | MB | Midbrain | 6.07 | |
| 5.94 | | |||
| Rbm27 | MY | Medulla | 3.69 | |
| 4.04 | | |||
| Rbm27 | OLF | Olfactory bulb | 13.42 | |
| 12.45 | | |||
| Rbm27 | P | Pons | 7.12 | |
| 8.19 | | |||
| Rbm27 | PAL | Pallidum | 4.88 | |
| 4.18 | | |||
| Rbm27 | RHP | Retrohippocampal region | 1.15 | |
| 1.31 | | |||
| Rbm27 | sAMY | Striatum-like amygdalar nuclei | 0.42 | |
| 0.37 | | |||
| Rbm27 | STR | Striatum | 3.31 | |
| 2.77 | | |||
| Rbm27 | STRd | Striatum dorsal region | 2.44 | |
| 2.31 | | |||
| Rbm27 | STRv | Striatum ventral region | 6.17 | |
| 4.21 | | |||
| Rbm27 | TH | Thalamus | 10.91 | |
| 11.06 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00004914 | 35 | 752 | 786 | LGHAGGNQSDASHLLNQSGGAGEDCQIFSTPGHPK | Peptide Atlas |