AutismKB 2.0

Annotation Detail for KCTD5


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Basic Information Top
Gene Symbol:KCTD5 ( FLJ20040 )
Gene Full Name: potassium channel tetramerisation domain containing 5
Band: 16p13.3
Quick LinksEntrez ID:54442; OMIM: 611285; Uniprot ID:KCTD5_HUMAN; ENSEMBL ID: ENSG00000167977; HGNC ID: 21423
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus27 / 56401247
neonate4 / 31097128
infant0 / 236200 
juvenile2 / 5555635
adult79 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor6 / 11424652
esophageal tumor1 / 1729057
gastrointestinal tumor3 / 11936925
germ cell tumor12 / 26384545
glioma8 / 10688374
head and neck tumor8 / 13630258
kidney tumor3 / 6895943
leukemia6 / 9584262
liver tumor5 / 9635951
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal165 / 336030749
ovarian tumor5 / 7668265
pancreatic tumor8 / 10461676
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer6 / 10268058
retinoblastoma1 / 4635621
skin tumor4 / 12494932
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood4 / 12347832
bone4 / 7165555
bone marrow0 / 488010 
brain52 / 110098947
cervix2 / 4817141
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue7 / 21572232
esophagus1 / 2020949
eye10 / 21105447
heart6 / 8962666
intestine23 / 23447298
kidney10 / 21177747
larynx0 / 241450 
liver7 / 20774333
lung15 / 33697444
lymph2 / 4427045
lymph node10 / 91610109
mammary gland4 / 15327126
mouth8 / 67052119
muscle3 / 10771527
nerve0 / 157680 
ovary6 / 10205158
pancreas14 / 21481265
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta7 / 28082524
prostate9 / 18934547
salivary gland0 / 201550 
skin10 / 21057447
spleen2 / 5395237
stomach3 / 9661931
testis10 / 33044230
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus22 / 23287894
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218474_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts212.35
Adipocyte10.25
AdrenalCortex11.3
Adrenalgland8.75
Amygdala12.55
Appendix10.55
AtrioventricularNode8.6
BDCA4+_DentriticCells618.6
Bonemarrow15.65
BronchialEpithelialCells93
CD105+_Endothelial21.15
CD14+_Monocytes74.75
CD19+_BCells(neg._sel.)48.15
CD33+_Myeloid47.95
CD34+26.75
CD4+_Tcells18.65
CD56+_NKCells87.1
CD71+_EarlyErythroid11.05
CD8+_Tcells13.1
CardiacMyocytes16.15
Caudatenucleus9.95
Cerebellum13
CerebellumPeduncles13.05
CiliaryGanglion7.95
CingulateCortex9.5
Colorectaladenocarcinoma19.3
DorsalRootGanglion8.9
FetalThyroid8.25
Fetalbrain17.2
Fetalliver14.2
Fetallung10.75
GlobusPallidus8
Heart15
Hypothalamus18.3
Kidney8.85
Leukemia_chronicMyelogenousK-56216.05
Leukemia_promyelocytic-HL-6020.55
Leukemialymphoblastic(MOLT-4)39.55
Liver15.5
Lung44.4
Lymphnode21.3
Lymphoma_burkitts(Daudi)20.35
Lymphoma_burkitts(Raji)20.35
MedullaOblongata7.6
OccipitalLobe9.9
OlfactoryBulb11.15
Ovary6.6
Pancreas9.2
PancreaticIslet10.55
ParietalLobe10.5
Pituitary11.45
Placenta23.2
Pons9.5
PrefrontalCortex13.25
Prostate17.65
Salivarygland7.05
SkeletalMuscle14.35
Skin8.65
SmoothMuscle28.65
Spinalcord21.7
SubthalamicNucleus9.45
SuperiorCervicalGanglion11.85
TemporalLobe9.2
Testis25.05
TestisGermCell18.05
TestisIntersitial9.05
TestisLeydigCell11.8
TestisSeminiferousTubule12.65
Thalamus12.15
Thymus28.35
Thyroid15.15
Tongue10.2
Tonsil13.65
Trachea8.55
TrigeminalGanglion11.25
Uterus8.6
UterusCorpus10
WholeBlood41.7
Wholebrain15.05
colon22.05
pineal_day18.5
pineal_night19.26
retina14.625
small_intestine17.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_8834_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.17 ± 0.24
Basal Forebrain8.06 ± 0.07
Basal Part of Pons8.01 ± 0.19
Cerebellar Cortex8.33 ± 0.19
Cerebellar Nuclei8.05 ± 0.22
Claustrum8.13 ± 0.2
Epithalamus7.96 ± 0.16
Frontal Lobe8.04 ± 0.25
Globus Pallidus7.99 ± 0.17
Hypothalamus7.88 ± 0.14
Insula7.96 ± 0.2
Limbic Lobe8.13 ± 0.37
Mesencephalon8 ± 0.25
Myelencephalon8.11 ± 0.24
Occipital Lobe8.46 ± 0.26
Parietal Lobe8.14 ± 0.2
Pontine Tegmentum8.09 ± 0.27
Striatum7.72 ± 0.21
Subthalamus7.78 ± 0.15
Temporal Lobe8.16 ± 0.2
Thalamus8.2 ± 0.2
White Matter8.72 ± 0.12
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Kctd5CBCerebellum5.87
5.62
Kctd5CTXCerebral cortex1.42
1.24
Kctd5HIPHippocampal region11.72
5.1
Kctd5HPFHippocampal formation8.62
3.83
Kctd5HYHypothalamus1
0.75
Kctd5LSXLateral septal complex0.71
0.55
Kctd5MBMidbrain0.89
0.78
Kctd5MYMedulla1.39
1.21
Kctd5OLFOlfactory bulb4.4
3.19
Kctd5PPons1.36
1.07
Kctd5PALPallidum0.62
0.53
Kctd5RHPRetrohippocampal region3.37
1.95
Kctd5sAMYStriatum-like amygdalar nuclei0.89
0.96
Kctd5STRStriatum1.01
0.85
Kctd5STRdStriatum dorsal region0.79
0.85
Kctd5STRvStriatum ventral region2.17
1.06
Kctd5THThalamus2.67
1.43
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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