AutismKB 2.0

Annotation Detail for CHPF2


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Basic Information Top
Gene Symbol:CHPF2 ( CSGLCA-T,CSGlcAT,ChSy-3,KIAA1402 )
Gene Full Name: chondroitin polymerizing factor 2
Band: 7q36.1
Quick LinksEntrez ID:54480; OMIM: 608037; Uniprot ID:CHPF2_HUMAN; ENSEMBL ID: ENSG00000033100; HGNC ID: 29270
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body7 / 7076198
blastocyst1 / 6231916
fetus9 / 56401215
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult92 / 193912147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma9 / 82823108
colorectal tumor6 / 11424652
esophageal tumor0 / 172900 
gastrointestinal tumor18 / 119369150
germ cell tumor17 / 26384564
glioma9 / 10688384
head and neck tumor9 / 13630266
kidney tumor8 / 68959116
leukemia6 / 9584262
liver tumor1 / 9635910
lung tumor7 / 10312767
lymphoma3 / 7175541
non-neoplasia0 / 972500 
normal105 / 336030731
ovarian tumor4 / 7668252
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor12 / 12494996
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites14 / 40015349
bladder1 / 2975733
blood3 / 12347824
bone7 / 7165597
bone marrow6 / 48801122
brain31 / 110098928
cervix2 / 4817141
connective tissue8 / 14925553
ear1 / 1621261
embryonic tissue12 / 21572255
esophagus0 / 202090 
eye8 / 21105437
heart1 / 8962611
intestine10 / 23447242
kidney8 / 21177737
larynx1 / 2414541
liver1 / 2077434
lung12 / 33697435
lymph3 / 4427067
lymph node0 / 916100 
mammary gland3 / 15327119
mouth8 / 67052119
muscle2 / 10771518
nerve2 / 15768126
ovary4 / 10205139
pancreas10 / 21481246
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland2 / 16585120
placenta11 / 28082539
prostate2 / 18934510
salivary gland4 / 20155198
skin15 / 21057471
spleen6 / 53952111
stomach3 / 9661931
testis6 / 33044218
thymus2 / 8113124
thyroid3 / 4747363
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus6 / 23287825
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 55093_at
Cell line Expression level Expression bar
721_B_lymphoblasts4.85
Adipocyte4.95
AdrenalCortex4.2
Adrenalgland3.5
Amygdala4.05
Appendix3.75
AtrioventricularNode2.7
BDCA4+_DentriticCells86.35
Bonemarrow3.75
BronchialEpithelialCells19.1
CD105+_Endothelial3.75
CD14+_Monocytes31.7
CD19+_BCells(neg._sel.)5.35
CD33+_Myeloid23.8
CD34+4.9
CD4+_Tcells6.85
CD56+_NKCells10.1
CD71+_EarlyErythroid5.5
CD8+_Tcells7.8
CardiacMyocytes21.85
Caudatenucleus3.35
Cerebellum3
CerebellumPeduncles4.25
CiliaryGanglion2.55
CingulateCortex4.6
Colorectaladenocarcinoma6.05
DorsalRootGanglion2.75
FetalThyroid4.85
Fetalbrain3.8
Fetalliver3.25
Fetallung3.7
GlobusPallidus2.65
Heart5.05
Hypothalamus4.15
Kidney2.9
Leukemia_chronicMyelogenousK-5623.45
Leukemia_promyelocytic-HL-603.3
Leukemialymphoblastic(MOLT-4)4
Liver8.9
Lung21.05
Lymphnode3.8
Lymphoma_burkitts(Daudi)4.7
Lymphoma_burkitts(Raji)5.1
MedullaOblongata3.5
OccipitalLobe3.3
OlfactoryBulb2.95
Ovary2.4
Pancreas3.35
PancreaticIslet4.45
ParietalLobe3.9
Pituitary7.15
Placenta19.35
Pons3.5
PrefrontalCortex4.8
Prostate6.7
Salivarygland2.9
SkeletalMuscle4.1
Skin2.75
SmoothMuscle56.75
Spinalcord4.05
SubthalamicNucleus3.3
SuperiorCervicalGanglion4.4
TemporalLobe3.4
Testis3.3
TestisGermCell3.2
TestisIntersitial3.15
TestisLeydigCell3.65
TestisSeminiferousTubule3.25
Thalamus3.7
Thymus3.05
Thyroid6.7
Tongue3.65
Tonsil3.8
Trachea3.15
TrigeminalGanglion3.55
Uterus4.25
UterusCorpus3.45
WholeBlood7.75
Wholebrain3.3
colon3.7
pineal_day4.64
pineal_night4.46
retina4.575
small_intestine3.5
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P397055
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.59 ± 0.61
Basal Forebrain3.06 ± 0.58
Basal Part of Pons3.5 ± 0.73
Cerebellar Cortex3.48 ± 0.69
Cerebellar Nuclei3.31 ± 0.57
Claustrum3.31 ± 0.68
Epithalamus3.05 ± 0.76
Frontal Lobe3.68 ± 0.59
Globus Pallidus2.9 ± 0.46
Hypothalamus3.4 ± 0.55
Insula3.78 ± 0.68
Limbic Lobe3.49 ± 0.63
Mesencephalon3.25 ± 0.66
Myelencephalon3.45 ± 0.72
Occipital Lobe3.04 ± 0.59
Parietal Lobe3.29 ± 0.73
Pontine Tegmentum3.31 ± 0.59
Striatum2.66 ± 0.76
Subthalamus3.11 ± 0.6
Temporal Lobe3.62 ± 0.52
Thalamus3.43 ± 0.61
White Matter2.07 ± 1.14
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2010209O12RikCBCerebellum25.53
36.21
2010209O12RikCTXCerebral cortex89.72
65.03
2010209O12RikHIPHippocampal region55.35
68.89
2010209O12RikHPFHippocampal formation66.67
68.87
2010209O12RikHYHypothalamus32.25
25.38
2010209O12RikLSXLateral septal complex34.68
20.73
2010209O12RikMBMidbrain48.09
44.17
2010209O12RikMYMedulla44.01
49.42
2010209O12RikOLFOlfactory bulb60.67
49.96
2010209O12RikPPons49.56
53.03
2010209O12RikPALPallidum39.18
36.34
2010209O12RikRHPRetrohippocampal region82.86
69.09
2010209O12RiksAMYStriatum-like amygdalar nuclei50.65
35.72
2010209O12RikSTRStriatum32.23
21.98
2010209O12RikSTRdStriatum dorsal region30.59
21.04
2010209O12RikSTRvStriatum ventral region28.09
18.9
2010209O12RikTHThalamus50.17
40.19
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00503720 16 401 416 ADVGDALETALEQLNR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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