Annotation Detail for ADAMTSL4
Basic Information Top
| Gene Symbol: | ADAMTSL4 ( TSRC1 ) |
|---|---|
| Gene Full Name: | ADAMTS-like 4 |
| Band: | 1q21.2 |
| Quick Links | Entrez ID:54507; OMIM: 610113; Uniprot ID:ATL4_HUMAN; ENSEMBL ID: ENSG00000143382; HGNC ID: 19706 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.516243
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 16 / 564012 | 28 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 124 / 1939121 | 63 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 137 / 3360307 | 40 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 4 / 13106 | 305 |  |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 3 / 1100989 | 2 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 3 / 89626 | 33 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 81 / 280825 | 288 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 4 / 210574 | 18 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1175_PI416573500
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.51 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.04 ± 0.4 | |
| Basal Part of Pons | 1.65 ± 0.58 | |
| Cerebellar Cortex | 1.84 ± 0.77 | |
| Cerebellar Nuclei | 2.6 ± 0.72 | |
| Claustrum | 2.86 ± 1 | |
| Epithalamus | 1.63 ± 0.67 | |
| Frontal Lobe | 2.02 ± 0.9 | |
| Globus Pallidus | 2.04 ± 0.64 | |
| Hypothalamus | 1.89 ± 0.63 | |
| Insula | 1.57 ± 0.61 | |
| Limbic Lobe | 2.06 ± 0.74 | |
| Mesencephalon | 2.46 ± 0.88 | |
| Myelencephalon | 2.17 ± 0.76 | |
| Occipital Lobe | 2.11 ± 0.71 | |
| Parietal Lobe | 2.13 ± 0.79 | |
| Pontine Tegmentum | 2.01 ± 0.7 | |
| Striatum | 2.52 ± 1.05 | |
| Subthalamus | 2.47 ± 0.37 | |
| Temporal Lobe | 1.98 ± 0.74 | |
| Thalamus | 2.16 ± 0.68 | |
| White Matter | 2.15 ± 0.54 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Adamtsl4 | CB | Cerebellum | 2.28 | |
| 2.45 | | |||
| Adamtsl4 | CTX | Cerebral cortex | 3.23 | |
| 2.26 | | |||
| Adamtsl4 | HIP | Hippocampal region | 1.62 | |
| 1.54 | | |||
| Adamtsl4 | HPF | Hippocampal formation | 1.23 | |
| 1.14 | | |||
| Adamtsl4 | HY | Hypothalamus | 0.4 | |
| 0.35 | | |||
| Adamtsl4 | LSX | Lateral septal complex | 0.13 | |
| 0.07 | | |||
| Adamtsl4 | MB | Midbrain | 2 | |
| 1.74 | | |||
| Adamtsl4 | MY | Medulla | 5.54 | |
| 5.23 | | |||
| Adamtsl4 | OLF | Olfactory bulb | 1.16 | |
| 0.91 | | |||
| Adamtsl4 | P | Pons | 3.88 | |
| 4.1 | | |||
| Adamtsl4 | PAL | Pallidum | 1.16 | |
| 0.89 | | |||
| Adamtsl4 | RHP | Retrohippocampal region | 0.48 | |
| 0.48 | | |||
| Adamtsl4 | sAMY | Striatum-like amygdalar nuclei | 0.41 | |
| 0.3 | | |||
| Adamtsl4 | STR | Striatum | 0.9 | |
| 0.63 | | |||
| Adamtsl4 | STRd | Striatum dorsal region | 1.14 | |
| 0.79 | | |||
| Adamtsl4 | STRv | Striatum ventral region | 0.59 | |
| 0.45 | | |||
| Adamtsl4 | TH | Thalamus | 1.79 | |
| 1.36 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00377271 | 17 | 782 | 798 | LCGHWEVGSPWSQCSVR | Peptide Atlas |