Annotation Detail for PCDH18
Basic Information Top
| Gene Symbol: | PCDH18 ( DKFZp434B0923,KIAA1562,PCDH68L ) |
|---|---|
| Gene Full Name: | protocadherin 18 |
| Band: | 4q28.3 |
| Quick Links | Entrez ID:54510; OMIM: 608287; Uniprot ID:PCD18_HUMAN; ENSEMBL ID: ENSG00000189184; HGNC ID: 14268 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591691
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 6 / 62319 | 96 | |
| fetus | 25 / 564012 | 44 |  |
| neonate | 7 / 31097 | 225 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 14 / 119369 | 117 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 103 / 3360307 | 30 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 17 / 1100989 | 15 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 9 / 16212 | 555 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 23 / 234472 | 98 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 13 / 107715 | 120 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 9 / 210574 | 42 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 7 / 52413 | 133 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 15 / 232878 | 64 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_501_PI416408490
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.91 ± 0.83 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.36 ± 0.33 | |
| Basal Part of Pons | 2.24 ± 0.58 | |
| Cerebellar Cortex | 2.34 ± 0.73 | |
| Cerebellar Nuclei | 2.78 ± 0.62 | |
| Claustrum | 3.01 ± 0.58 | |
| Epithalamus | 2.31 ± 0.64 | |
| Frontal Lobe | 2.34 ± 0.7 | |
| Globus Pallidus | 3.31 ± 0.62 | |
| Hypothalamus | 2.75 ± 0.48 | |
| Insula | 2.48 ± 0.49 | |
| Limbic Lobe | 2.47 ± 0.67 | |
| Mesencephalon | 2.76 ± 0.66 | |
| Myelencephalon | 2.58 ± 0.67 | |
| Occipital Lobe | 2.62 ± 0.77 | |
| Parietal Lobe | 2.57 ± 0.75 | |
| Pontine Tegmentum | 2.51 ± 0.69 | |
| Striatum | 2.62 ± 0.67 | |
| Subthalamus | 2.75 ± 0.98 | |
| Temporal Lobe | 2.58 ± 0.69 | |
| Thalamus | 2.45 ± 0.59 | |
| White Matter | 2.04 ± 0.4 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Pcdh18 | CB | Cerebellum | 5.07 | |
| 5.55 | | |||
| Pcdh18 | CTX | Cerebral cortex | 6.98 | |
| 5.72 | | |||
| Pcdh18 | HIP | Hippocampal region | 3.06 | |
| 3.12 | | |||
| Pcdh18 | HPF | Hippocampal formation | 3.5 | |
| 3.23 | | |||
| Pcdh18 | HY | Hypothalamus | 7.35 | |
| 5.94 | | |||
| Pcdh18 | LSX | Lateral septal complex | 2.11 | |
| 1.7 | | |||
| Pcdh18 | MB | Midbrain | 6.73 | |
| 6.01 | | |||
| Pcdh18 | MY | Medulla | 4.02 | |
| 4.54 | | |||
| Pcdh18 | OLF | Olfactory bulb | 14.92 | |
| 11.82 | | |||
| Pcdh18 | P | Pons | 4.51 | |
| 5.27 | | |||
| Pcdh18 | PAL | Pallidum | 7.9 | |
| 7.2 | | |||
| Pcdh18 | RHP | Retrohippocampal region | 4.03 | |
| 3.26 | | |||
| Pcdh18 | sAMY | Striatum-like amygdalar nuclei | 19.58 | |
| 16.99 | | |||
| Pcdh18 | STR | Striatum | 4.4 | |
| 3.61 | | |||
| Pcdh18 | STRd | Striatum dorsal region | 1.77 | |
| 1.47 | | |||
| Pcdh18 | STRv | Striatum ventral region | 5.16 | |
| 3.47 | | |||
| Pcdh18 | TH | Thalamus | 3.68 | |
| 3.06 | |