AutismKB 2.0

Annotation Detail for CCNJ


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Basic Information Top
Gene Symbol:CCNJ ( bA690P14.1 )
Gene Full Name: cyclin J
Band: 10q24.1
Quick LinksEntrez ID:54619; OMIM: NA; Uniprot ID:CCNJ_HUMAN; ENSEMBL ID: ENSG00000107443; HGNC ID: 23434
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst3 / 6231948
fetus15 / 56401226
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult21 / 193912110
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor6 / 26384522
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal58 / 336030717
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder0 / 297570 
blood0 / 1234780 
bone1 / 7165513
bone marrow0 / 488010 
brain28 / 110098925
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue13 / 21572260
esophagus0 / 202090 
eye4 / 21105418
heart0 / 896260 
intestine5 / 23447221
kidney5 / 21177723
larynx0 / 241450 
liver1 / 2077434
lung2 / 3369745
lymph0 / 442700 
lymph node1 / 9161010
mammary gland3 / 15327119
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach1 / 9661910
testis12 / 33044236
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus1 / 2328784
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219470_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.95
Adipocyte9.1
AdrenalCortex12.35
Adrenalgland8.5
Amygdala9.35
Appendix11.55
AtrioventricularNode15.45
BDCA4+_DentriticCells12.1
Bonemarrow11.65
BronchialEpithelialCells8.55
CD105+_Endothelial10.9
CD14+_Monocytes12.7
CD19+_BCells(neg._sel.)10.65
CD33+_Myeloid23.05
CD34+28.25
CD4+_Tcells9.65
CD56+_NKCells10.55
CD71+_EarlyErythroid9.1
CD8+_Tcells10.95
CardiacMyocytes14.65
Caudatenucleus8.3
Cerebellum7.6
CerebellumPeduncles16.2
CiliaryGanglion32.4
CingulateCortex10.35
Colorectaladenocarcinoma8.75
DorsalRootGanglion13.8
FetalThyroid13.85
Fetalbrain10.65
Fetalliver8.6
Fetallung7.8
GlobusPallidus9.1
Heart14.35
Hypothalamus9.95
Kidney8.9
Leukemia_chronicMyelogenousK-5629.05
Leukemia_promyelocytic-HL-608.3
Leukemialymphoblastic(MOLT-4)7.95
Liver13.95
Lung9.7
Lymphnode7.6
Lymphoma_burkitts(Daudi)12.6
Lymphoma_burkitts(Raji)14.5
MedullaOblongata8.5
OccipitalLobe8.4
OlfactoryBulb7.65
Ovary8.3
Pancreas9.05
PancreaticIslet12.15
ParietalLobe10.75
Pituitary11
Placenta8.5
Pons9.85
PrefrontalCortex11.35
Prostate10.6
Salivarygland7.9
SkeletalMuscle13.25
Skin16.55
SmoothMuscle10.5
Spinalcord10.7
SubthalamicNucleus9.65
SuperiorCervicalGanglion12.9
TemporalLobe8.9
Testis7.6
TestisGermCell7.55
TestisIntersitial10.25
TestisLeydigCell11.15
TestisSeminiferousTubule9.3
Thalamus9.95
Thymus6.8
Thyroid10.05
Tongue12.2
Tonsil10.6
Trachea8.15
TrigeminalGanglion17.5
Uterus7.55
UterusCorpus9.35
WholeBlood9.9
Wholebrain6.95
colon9.3
pineal_day12.58
pineal_night13.96
retina11.375
small_intestine8.4
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P24176
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.84 ± 0.33
Basal Forebrain4.74 ± 0.38
Basal Part of Pons4.85 ± 0.4
Cerebellar Cortex5.27 ± 0.18
Cerebellar Nuclei4.66 ± 0.42
Claustrum5 ± 0.61
Epithalamus4.94 ± 0.49
Frontal Lobe4.68 ± 0.46
Globus Pallidus4.52 ± 0.53
Hypothalamus4.45 ± 0.76
Insula4.9 ± 0.27
Limbic Lobe4.85 ± 0.43
Mesencephalon4.83 ± 0.5
Myelencephalon4.88 ± 0.48
Occipital Lobe5.25 ± 0.49
Parietal Lobe4.83 ± 0.4
Pontine Tegmentum4.87 ± 0.48
Striatum5.3 ± 0.51
Subthalamus4.4 ± 0.2
Temporal Lobe4.77 ± 0.39
Thalamus4.98 ± 0.43
White Matter4.6 ± 0.12
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
CcnjCBCerebellum2.75
3.01
CcnjCTXCerebral cortex13.28
9.13
CcnjHIPHippocampal region13.4
11.96
CcnjHPFHippocampal formation10.46
8.53
CcnjHYHypothalamus6.98
5.64
CcnjLSXLateral septal complex4.47
3.01
CcnjMBMidbrain3.63
3.55
CcnjMYMedulla1.21
1.17
CcnjOLFOlfactory bulb12.34
9.16
CcnjPPons3.77
3.64
CcnjPALPallidum11.16
13.45
CcnjRHPRetrohippocampal region5.65
3.9
CcnjsAMYStriatum-like amygdalar nuclei4.36
2.45
CcnjSTRStriatum3.86
2.66
CcnjSTRdStriatum dorsal region3.9
2.6
CcnjSTRvStriatum ventral region2.43
2.23
CcnjTHThalamus4.75
4.51
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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