AutismKB 2.0

Annotation Detail for ZNHIT6


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Basic Information Top
Gene Symbol:ZNHIT6 ( BCD1,C1orf181,FLJ12602,FLJ20729,FLJ20760,MGC131963,NY-BR-75 )
Gene Full Name: zinc finger, HIT-type containing 6
Band: 1p22.3
Quick LinksEntrez ID:54680; OMIM: NA; Uniprot ID:BCD1_HUMAN; ENSEMBL ID: ENSG00000117174; HGNC ID: 26089
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst1 / 6231916
fetus15 / 56401226
neonate1 / 3109732
infant2 / 2362084
juvenile0 / 555560 
adult63 / 193912132
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor5 / 9417853
cervical tumor4 / 34366116
chondrosarcoma5 / 8282360
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor16 / 26384560
glioma3 / 10688328
head and neck tumor1 / 1363027
kidney tumor4 / 6895958
leukemia0 / 958420 
liver tumor5 / 9635951
lung tumor0 / 1031270 
lymphoma2 / 7175527
non-neoplasia3 / 9725030
normal84 / 336030724
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor6 / 12494948
soft tissue/muscle tissue tumor10 / 12519179
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone3 / 7165541
bone marrow0 / 488010 
brain29 / 110098926
cervix6 / 48171124
connective tissue13 / 14925587
ear3 / 16212185
embryonic tissue7 / 21572232
esophagus0 / 202090 
eye1 / 2110544
heart3 / 8962633
intestine8 / 23447234
kidney8 / 21177737
larynx0 / 241450 
liver5 / 20774324
lung4 / 33697411
lymph1 / 4427022
lymph node1 / 9161010
mammary gland5 / 15327132
mouth1 / 6705214
muscle6 / 10771555
nerve0 / 157680 
ovary0 / 1020510 
pancreas5 / 21481223
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta2 / 2808257
prostate6 / 18934531
salivary gland1 / 2015549
skin9 / 21057442
spleen3 / 5395255
stomach2 / 9661920
testis12 / 33044236
thymus2 / 8113124
thyroid1 / 4747321
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus4 / 23287817
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218932_at
Cell line Expression level Expression bar
721_B_lymphoblasts85.9
Adipocyte8.05
AdrenalCortex8.5
Adrenalgland6.85
Amygdala8.55
Appendix8.2
AtrioventricularNode6.55
BDCA4+_DentriticCells33.2
Bonemarrow7.6
BronchialEpithelialCells8
CD105+_Endothelial33.05
CD14+_Monocytes9.35
CD19+_BCells(neg._sel.)66.2
CD33+_Myeloid9.8
CD34+172.1
CD4+_Tcells37.7
CD56+_NKCells117.3
CD71+_EarlyErythroid6.95
CD8+_Tcells75.15
CardiacMyocytes11.5
Caudatenucleus7.25
Cerebellum6.45
CerebellumPeduncles9.3
CiliaryGanglion6
CingulateCortex8.2
Colorectaladenocarcinoma8.05
DorsalRootGanglion7.15
FetalThyroid7.85
Fetalbrain6.9
Fetalliver6.95
Fetallung7.55
GlobusPallidus5.95
Heart11.05
Hypothalamus15.15
Kidney6.5
Leukemia_chronicMyelogenousK-56212.05
Leukemia_promyelocytic-HL-6017.75
Leukemialymphoblastic(MOLT-4)25.75
Liver10.65
Lung7.75
Lymphnode9.1
Lymphoma_burkitts(Daudi)10.15
Lymphoma_burkitts(Raji)11.55
MedullaOblongata7.45
OccipitalLobe7.8
OlfactoryBulb8.55
Ovary7.4
Pancreas6.3
PancreaticIslet8.55
ParietalLobe8.85
Pituitary9.55
Placenta7
Pons7.75
PrefrontalCortex19.55
Prostate10.2
Salivarygland6.45
SkeletalMuscle9.75
Skin7.65
SmoothMuscle9.3
Spinalcord10.2
SubthalamicNucleus7.9
SuperiorCervicalGanglion10.4
TemporalLobe7.3
Testis6.55
TestisGermCell6.8
TestisIntersitial6.7
TestisLeydigCell7.85
TestisSeminiferousTubule6.85
Thalamus8.1
Thymus5.6
Thyroid9.9
Tongue8
Tonsil8.5
Trachea6.7
TrigeminalGanglion8.3
Uterus12.3
UterusCorpus8.35
WholeBlood8.4
Wholebrain6.75
colon8.15
pineal_day16.6
pineal_night14.04
retina9.575
small_intestine7.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5927_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.81 ± 0.5
Basal Forebrain4.97 ± 0.17
Basal Part of Pons4.5 ± 0.28
Cerebellar Cortex4.72 ± 0.32
Cerebellar Nuclei4.92 ± 0.31
Claustrum4.62 ± 0.57
Epithalamus4.89 ± 0.27
Frontal Lobe4.68 ± 0.4
Globus Pallidus5.3 ± 0.32
Hypothalamus4.85 ± 0.38
Insula4.63 ± 0.21
Limbic Lobe4.64 ± 0.34
Mesencephalon4.72 ± 0.46
Myelencephalon4.67 ± 0.4
Occipital Lobe4.76 ± 0.4
Parietal Lobe4.75 ± 0.33
Pontine Tegmentum4.8 ± 0.4
Striatum4.75 ± 0.37
Subthalamus4.75 ± 0.76
Temporal Lobe4.62 ± 0.36
Thalamus4.63 ± 0.39
White Matter5.61 ± 0.1
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
2410019A14RikCBCerebellum17.62
20.37
2410019A14RikCTXCerebral cortex12.08
7.89
2410019A14RikHIPHippocampal region11.95
10.39
2410019A14RikHPFHippocampal formation17.11
13.94
2410019A14RikHYHypothalamus6.18
4.16
2410019A14RikLSXLateral septal complex1.87
1.19
2410019A14RikMBMidbrain15.06
12.48
2410019A14RikMYMedulla31.27
30.32
2410019A14RikOLFOlfactory bulb18.33
14.02
2410019A14RikPPons22.33
21.17
2410019A14RikPALPallidum8.74
7.08
2410019A14RikRHPRetrohippocampal region29.12
21.44
2410019A14RiksAMYStriatum-like amygdalar nuclei16.29
10.9
2410019A14RikSTRStriatum7.96
5.45
2410019A14RikSTRdStriatum dorsal region8.38
5.96
2410019A14RikSTRvStriatum ventral region5.73
3.56
2410019A14RikTHThalamus7.28
5.03
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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