AutismKB 2.0

Annotation Detail for RBFOX1


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Basic Information Top
Gene Symbol:RBFOX1 ( A2BP1,FOX-1,FOX1,HRNBP1 )
Gene Full Name: RNA binding protein, fox-1 homolog (C. elegans) 1
Band: 16p13.3
Quick LinksEntrez ID:54715; OMIM: 605104; Uniprot ID:RFOX1_HUMAN; ENSEMBL ID: ENSG00000078328; HGNC ID: 18222
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus68 / 564012120
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult38 / 193912119
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor12 / 26384545
glioma2 / 10688318
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal151 / 336030744
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain103 / 110098993
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus0 / 202090 
eye7 / 21105433
heart1 / 8962611
intestine0 / 2344720 
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung6 / 33697417
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle10 / 10771592
nerve1 / 1576863
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221217_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts5.3
Adipocyte4.25
AdrenalCortex4.55
Adrenalgland3.6
Amygdala185
Appendix4.9
AtrioventricularNode3.3
BDCA4+_DentriticCells4.45
Bonemarrow4.25
BronchialEpithelialCells4.3
CD105+_Endothelial4.35
CD14+_Monocytes4.6
CD19+_BCells(neg._sel.)4.55
CD33+_Myeloid6.05
CD34+5.35
CD4+_Tcells4.65
CD56+_NKCells4.9
CD71+_EarlyErythroid4
CD8+_Tcells4.1
CardiacMyocytes5.45
Caudatenucleus62.1
Cerebellum9.7
CerebellumPeduncles24.5
CiliaryGanglion3.1
CingulateCortex123.6
Colorectaladenocarcinoma4.3
DorsalRootGanglion3.35
FetalThyroid4.2
Fetalbrain51.35
Fetalliver3.7
Fetallung3.55
GlobusPallidus92.85
Heart10.6
Hypothalamus10.4
Kidney3.45
Leukemia_chronicMyelogenousK-5623.9
Leukemia_promyelocytic-HL-603.8
Leukemialymphoblastic(MOLT-4)3.45
Liver5.7
Lung4.7
Lymphnode3.7
Lymphoma_burkitts(Daudi)5.45
Lymphoma_burkitts(Raji)6.05
MedullaOblongata207.65
OccipitalLobe108
OlfactoryBulb3.35
Ovary2.85
Pancreas3.45
PancreaticIslet4.6
ParietalLobe95.45
Pituitary5
Placenta4.4
Pons143
PrefrontalCortex349.65
Prostate5.05
Salivarygland3.4
SkeletalMuscle20.4
Skin3.3
SmoothMuscle4.9
Spinalcord4.6
SubthalamicNucleus215.8
SuperiorCervicalGanglion5.7
TemporalLobe187.35
Testis3.7
TestisGermCell3.65
TestisIntersitial3.6
TestisLeydigCell4.3
TestisSeminiferousTubule3.7
Thalamus27.65
Thymus3.35
Thyroid5.4
Tongue7.7
Tonsil4.2
Trachea3.6
TrigeminalGanglion4.35
Uterus3.5
UterusCorpus4.15
WholeBlood4.7
Wholebrain239.35
colon4.3
pineal_day5.42
pineal_night5.8
retina5.25
small_intestine4.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P140858
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala11.9 ± 0.56
Basal Forebrain11 ± 0.49
Basal Part of Pons12.2 ± 0.29
Cerebellar Cortex11.29 ± 0.15
Cerebellar Nuclei10.27 ± 0.77
Claustrum11.59 ± 0.3
Epithalamus9.95 ± 0.88
Frontal Lobe11.47 ± 0.54
Globus Pallidus8.79 ± 1.06
Hypothalamus10.69 ± 1
Insula11.51 ± 0.28
Limbic Lobe11.67 ± 0.89
Mesencephalon10.71 ± 0.78
Myelencephalon11.37 ± 0.76
Occipital Lobe11.85 ± 0.45
Parietal Lobe11.71 ± 0.57
Pontine Tegmentum11.4 ± 0.55
Striatum12.12 ± 0.42
Subthalamus11.8 ± 0.51
Temporal Lobe11.65 ± 0.45
Thalamus11.49 ± 0.39
White Matter8.73 ± 0.55
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
A2bp1CBCerebellum47.46
66.09
A2bp1CTXCerebral cortex100
97.11
A2bp1HIPHippocampal region85.01
100
A2bp1HPFHippocampal formation99.56
100
A2bp1HYHypothalamus85.81
66.61
A2bp1LSXLateral septal complex100
100
A2bp1MBMidbrain64.15
53.45
A2bp1MYMedulla66.8
64.8
A2bp1OLFOlfactory bulb100
100
A2bp1PPons59.48
59.23
A2bp1PALPallidum81.9
71.03
A2bp1RHPRetrohippocampal region100
100
A2bp1sAMYStriatum-like amygdalar nuclei100
100
A2bp1STRStriatum100
100
A2bp1STRdStriatum dorsal region100
100
A2bp1STRvStriatum ventral region100
100
A2bp1THThalamus100
100
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00481948 9 139 147 LHVSNIPFR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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