Annotation Detail for TET2
Basic Information Top
| Gene Symbol: | TET2 ( FLJ20032,KIAA1546,MGC125715 ) |
|---|---|
| Gene Full Name: | tet oncogene family member 2 |
| Band: | 4q24 |
| Quick Links | Entrez ID:54790; OMIM: 612839; Uniprot ID:TET2_HUMAN; ENSEMBL ID: ENSG00000168769; HGNC ID: 25941 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.367639
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 23 / 564012 | 40 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 172 / 1939121 | 88 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 101 / 94178 | 1072 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 16 / 136302 | 117 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 26 / 95842 | 271 |  |
| liver tumor | 1 / 96359 | 10 |  |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 76 / 3360307 | 22 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 29 / 123478 | 234 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 2 / 149255 | 13 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 105 / 153271 | 685 | |
| mouth | 16 / 67052 | 238 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_13544_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.36 ± 0.54 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.52 ± 0.37 | |
| Basal Part of Pons | 3.91 ± 0.55 | |
| Cerebellar Cortex | 4.24 ± 0.37 | |
| Cerebellar Nuclei | 4.43 ± 0.62 | |
| Claustrum | 3.94 ± 0.81 | |
| Epithalamus | 5.13 ± 0.68 | |
| Frontal Lobe | 4.17 ± 0.49 | |
| Globus Pallidus | 5.21 ± 0.46 | |
| Hypothalamus | 4.33 ± 0.58 | |
| Insula | 4.08 ± 0.26 | |
| Limbic Lobe | 4.12 ± 0.48 | |
| Mesencephalon | 4.42 ± 0.54 | |
| Myelencephalon | 4.3 ± 0.57 | |
| Occipital Lobe | 4.69 ± 0.55 | |
| Parietal Lobe | 4.27 ± 0.48 | |
| Pontine Tegmentum | 4.36 ± 0.48 | |
| Striatum | 4.65 ± 0.41 | |
| Subthalamus | 3.84 ± 0.5 | |
| Temporal Lobe | 4.25 ± 0.47 | |
| Thalamus | 4.45 ± 0.44 | |
| White Matter | 5.96 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| E130014J05Rik | CB | Cerebellum | 20.56 | |
| 24.28 | | |||
| E130014J05Rik | CTX | Cerebral cortex | 64.9 | |
| 47.57 | | |||
| E130014J05Rik | HIP | Hippocampal region | 42.01 | |
| 47.75 | | |||
| E130014J05Rik | HPF | Hippocampal formation | 49.22 | |
| 48.16 | | |||
| E130014J05Rik | HY | Hypothalamus | 28.67 | |
| 20.22 | | |||
| E130014J05Rik | LSX | Lateral septal complex | 60.13 | |
| 45 | | |||
| E130014J05Rik | MB | Midbrain | 33.28 | |
| 28.13 | | |||
| E130014J05Rik | MY | Medulla | 31.1 | |
| 30.23 | | |||
| E130014J05Rik | OLF | Olfactory bulb | 53.13 | |
| 40.21 | | |||
| E130014J05Rik | P | Pons | 22.97 | |
| 21.51 | | |||
| E130014J05Rik | PAL | Pallidum | 28.08 | |
| 21.75 | | |||
| E130014J05Rik | RHP | Retrohippocampal region | 60.89 | |
| 49.4 | | |||
| E130014J05Rik | sAMY | Striatum-like amygdalar nuclei | 45.5 | |
| 30.8 | | |||
| E130014J05Rik | STR | Striatum | 49.51 | |
| 36.09 | | |||
| E130014J05Rik | STRd | Striatum dorsal region | 44.05 | |
| 31.94 | | |||
| E130014J05Rik | STRv | Striatum ventral region | 68.69 | |
| 51.22 | | |||
| E130014J05Rik | TH | Thalamus | 49.2 | |
| 37.99 | |