AutismKB 2.0

Annotation Detail for KCTD9


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Basic Information Top
Gene Symbol:KCTD9 ( FLJ20038 )
Gene Full Name: potassium channel tetramerisation domain containing 9
Band: 8p21.2
Quick LinksEntrez ID:54793; OMIM: NA; Uniprot ID:KCTD9_HUMAN; ENSEMBL ID: ENSG00000104756; HGNC ID: 22401
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus9 / 56401215
neonate0 / 310970 
infant0 / 236200 
juvenile2 / 5555635
adult44 / 193912122
embryoid body3 / 7076142
blastocyst2 / 6231932
fetus1 / 5640121
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult8 / 19391214
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor2 / 12794156
bladder carcinoma2 / 17475114
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor2 / 11936916
germ cell tumor4 / 26384515
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia2 / 9584220
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal80 / 336030723
ovarian tumor5 / 7668265
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor2 / 9025722
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal27 / 33603078
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites1 / 4001524
bladder2 / 2975767
blood1 / 1234788
bone1 / 7165513
bone marrow0 / 488010 
brain8 / 11009897
cervix1 / 4817120
connective tissue6 / 14925540
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye4 / 21105418
heart0 / 896260 
intestine5 / 23447221
kidney2 / 2117779
larynx0 / 241450 
liver17 / 20774381
lung3 / 3369748
lymph0 / 442700 
lymph node1 / 9161010
mammary gland2 / 15327113
mouth0 / 670520 
muscle4 / 10771537
nerve2 / 15768126
ovary5 / 10205148
pancreas4 / 21481218
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland1 / 1658560
placenta4 / 28082514
prostate5 / 18934526
salivary gland2 / 2015599
skin6 / 21057428
spleen1 / 5395218
stomach1 / 9661910
testis10 / 33044230
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus9 / 23287838
vascular3 / 5178057
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites3 / 4001574
bladder1 / 2975733
blood1 / 1234788
bone0 / 716550 
bone marrow0 / 488010 
brain2 / 11009891
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue5 / 21572223
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine3 / 23447212
kidney5 / 21177723
larynx0 / 241450 
liver1 / 2077434
lung1 / 3369742
lymph0 / 442700 
lymph node2 / 9161021
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta2 / 2808257
prostate1 / 1893455
salivary gland0 / 201550 
skin3 / 21057414
spleen0 / 539520 
stomach1 / 9661910
testis8 / 33044224
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218823_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts12.8
Adipocyte10.75
AdrenalCortex12.3
Adrenalgland8.75
Amygdala9.75
Appendix13.9
AtrioventricularNode12.45
BDCA4+_DentriticCells9.75
Bonemarrow10.65
BronchialEpithelialCells44.4
CD105+_Endothelial10.9
CD14+_Monocytes10.35
CD19+_BCells(neg._sel.)10.8
CD33+_Myeloid11.95
CD34+11.65
CD4+_Tcells10.4
CD56+_NKCells23.75
CD71+_EarlyErythroid16.7
CD8+_Tcells12.85
CardiacMyocytes23.8
Caudatenucleus8.6
Cerebellum7.7
CerebellumPeduncles11.35
CiliaryGanglion9.7
CingulateCortex10.5
Colorectaladenocarcinoma14.95
DorsalRootGanglion14.25
FetalThyroid9.6
Fetalbrain9.2
Fetalliver8.65
Fetallung7.4
GlobusPallidus7.85
Heart14.45
Hypothalamus10
Kidney8.85
Leukemia_chronicMyelogenousK-56231.7
Leukemia_promyelocytic-HL-6020.3
Leukemialymphoblastic(MOLT-4)35
Liver13.85
Lung10.3
Lymphnode8
Lymphoma_burkitts(Daudi)13.85
Lymphoma_burkitts(Raji)15.05
MedullaOblongata8.75
OccipitalLobe8.65
OlfactoryBulb13.95
Ovary8.4
Pancreas8.1
PancreaticIslet10.65
ParietalLobe11.35
Pituitary15.35
Placenta9.5
Pons9.7
PrefrontalCortex12.7
Prostate15.4
Salivarygland11.5
SkeletalMuscle14.2
Skin11.5
SmoothMuscle14.8
Spinalcord10.75
SubthalamicNucleus8.9
SuperiorCervicalGanglion29.55
TemporalLobe9.05
Testis8.3
TestisGermCell8.6
TestisIntersitial9.1
TestisLeydigCell10.25
TestisSeminiferousTubule15.5
Thalamus10.3
Thymus7.75
Thyroid14.35
Tongue11.35
Tonsil11.05
Trachea8.9
TrigeminalGanglion14.05
Uterus14.65
UterusCorpus9.5
WholeBlood10.8
Wholebrain7.55
colon46.05
pineal_day13.12
pineal_night16.2
retina16.625
small_intestine25.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2999_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.05 ± 0.68
Basal Forebrain3.76 ± 0.43
Basal Part of Pons4.28 ± 0.43
Cerebellar Cortex4.32 ± 0.34
Cerebellar Nuclei4.47 ± 0.5
Claustrum3.48 ± 0.76
Epithalamus3.95 ± 0.93
Frontal Lobe4.05 ± 0.55
Globus Pallidus4.33 ± 0.65
Hypothalamus3.95 ± 0.52
Insula3.78 ± 0.73
Limbic Lobe3.82 ± 0.53
Mesencephalon4 ± 0.57
Myelencephalon3.93 ± 0.6
Occipital Lobe3.85 ± 0.6
Parietal Lobe4.09 ± 0.48
Pontine Tegmentum3.97 ± 0.47
Striatum3.64 ± 0.52
Subthalamus4.59 ± 0.23
Temporal Lobe3.84 ± 0.58
Thalamus3.91 ± 0.56
White Matter3.93 ± 0.1
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Kctd9CBCerebellum22.46
35.56
Kctd9CTXCerebral cortex6.82
5.42
Kctd9HIPHippocampal region6.47
6.03
Kctd9HPFHippocampal formation6.79
5.88
Kctd9HYHypothalamus16.42
14.44
Kctd9LSXLateral septal complex3.46
2.21
Kctd9MBMidbrain19.31
23.87
Kctd9MYMedulla43.6
67.46
Kctd9OLFOlfactory bulb14.99
12.48
Kctd9PPons37.81
52.23
Kctd9PALPallidum23.43
27.62
Kctd9RHPRetrohippocampal region7.37
5.74
Kctd9sAMYStriatum-like amygdalar nuclei7.36
7.15
Kctd9STRStriatum5.23
4.73
Kctd9STRdStriatum dorsal region2.59
2.32
Kctd9STRvStriatum ventral region10.42
8.76
Kctd9THThalamus13.6
12.08
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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