AutismKB 2.0

Annotation Detail for TRIT1


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Basic Information Top
Gene Symbol:TRIT1 ( FLJ20061,IPT,MGC149242,MGC149243,MOD5 )
Gene Full Name: tRNA isopentenyltransferase 1
Band: 1p34.2
Quick LinksEntrez ID:54802; OMIM: NA; Uniprot ID:MOD5_HUMAN; ENSEMBL ID: ENSG00000043514; HGNC ID: 20286
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst4 / 6231964
fetus21 / 56401237
neonate2 / 3109764
infant0 / 236200 
juvenile3 / 5555653
adult92 / 193912147
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma4 / 8282348
colorectal tumor7 / 11424661
esophageal tumor1 / 1729057
gastrointestinal tumor9 / 11936975
germ cell tumor12 / 26384545
glioma2 / 10688318
head and neck tumor1 / 1363027
kidney tumor2 / 6895929
leukemia13 / 95842135
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal117 / 336030734
ovarian tumor3 / 7668239
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS7 / 12568055
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor4 / 12519131
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder4 / 29757134
blood4 / 12347832
bone4 / 7165555
bone marrow10 / 48801204
brain37 / 110098933
cervix2 / 4817141
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye5 / 21105423
heart4 / 8962644
intestine14 / 23447259
kidney5 / 21177723
larynx0 / 241450 
liver4 / 20774319
lung10 / 33697429
lymph0 / 442700 
lymph node5 / 9161054
mammary gland3 / 15327119
mouth0 / 670520 
muscle2 / 10771518
nerve0 / 157680 
ovary3 / 10205129
pancreas8 / 21481237
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta16 / 28082556
prostate4 / 18934521
salivary gland1 / 2015549
skin3 / 21057414
spleen0 / 539520 
stomach8 / 9661982
testis15 / 33044245
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus17 / 23287872
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218617_at
Cell line Expression level Expression bar
721_B_lymphoblasts61.7
Adipocyte11.05
AdrenalCortex13.5
Adrenalgland10.1
Amygdala11.5
Appendix16.4
AtrioventricularNode10.5
BDCA4+_DentriticCells157.65
Bonemarrow12.15
BronchialEpithelialCells11.95
CD105+_Endothelial25.65
CD14+_Monocytes21.25
CD19+_BCells(neg._sel.)18.6
CD33+_Myeloid70.45
CD34+23.4
CD4+_Tcells14.1
CD56+_NKCells15.7
CD71+_EarlyErythroid11.3
CD8+_Tcells20
CardiacMyocytes20.9
Caudatenucleus9.45
Cerebellum8.55
CerebellumPeduncles12.55
CiliaryGanglion11.9
CingulateCortex9.5
Colorectaladenocarcinoma12.45
DorsalRootGanglion10
FetalThyroid13.75
Fetalbrain14.65
Fetalliver9.5
Fetallung12.5
GlobusPallidus9.2
Heart14.95
Hypothalamus16.8
Kidney10.1
Leukemia_chronicMyelogenousK-56270.65
Leukemia_promyelocytic-HL-6084.1
Leukemialymphoblastic(MOLT-4)14.15
Liver16.55
Lung11.95
Lymphnode12.6
Lymphoma_burkitts(Daudi)15.8
Lymphoma_burkitts(Raji)68.05
MedullaOblongata8.55
OccipitalLobe8
OlfactoryBulb8.75
Ovary8.45
Pancreas9.85
PancreaticIslet15.8
ParietalLobe12.7
Pituitary13.9
Placenta11
Pons10.85
PrefrontalCortex14.35
Prostate22.4
Salivarygland9
SkeletalMuscle15.2
Skin9.9
SmoothMuscle13.2
Spinalcord10.25
SubthalamicNucleus10.8
SuperiorCervicalGanglion19.15
TemporalLobe8.75
Testis14.3
TestisGermCell14.65
TestisIntersitial10.75
TestisLeydigCell12
TestisSeminiferousTubule10.5
Thalamus10.45
Thymus8.7
Thyroid17.55
Tongue14
Tonsil10.9
Trachea9.9
TrigeminalGanglion15.2
Uterus10.45
UterusCorpus11.15
WholeBlood14.25
Wholebrain8.25
colon11.55
pineal_day26.5
pineal_night18.44
retina16.925
small_intestine10.25
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_7699_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala7.05 ± 0.33
Basal Forebrain6.88 ± 0.19
Basal Part of Pons6.66 ± 0.26
Cerebellar Cortex6.95 ± 0.29
Cerebellar Nuclei6.3 ± 0.44
Claustrum6.92 ± 0.52
Epithalamus6.78 ± 0.41
Frontal Lobe6.55 ± 0.39
Globus Pallidus6.44 ± 0.25
Hypothalamus6.63 ± 0.36
Insula6.72 ± 0.4
Limbic Lobe6.93 ± 0.41
Mesencephalon6.59 ± 0.37
Myelencephalon6.66 ± 0.4
Occipital Lobe6.91 ± 0.37
Parietal Lobe6.71 ± 0.41
Pontine Tegmentum6.64 ± 0.35
Striatum6.92 ± 0.43
Subthalamus6.43 ± 0.26
Temporal Lobe6.65 ± 0.36
Thalamus6.52 ± 0.33
White Matter6.55 ± 0.33
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Trit1CBCerebellum2.31
3.15
Trit1CTXCerebral cortex11.8
8.93
Trit1HIPHippocampal region20.79
26.77
Trit1HPFHippocampal formation13.12
15.44
Trit1HYHypothalamus5.74
4.45
Trit1LSXLateral septal complex0.85
0.87
Trit1MBMidbrain4.6
4.78
Trit1MYMedulla0.93
1.25
Trit1OLFOlfactory bulb4.21
3.23
Trit1PPons2.08
2.78
Trit1PALPallidum3.24
2.7
Trit1RHPRetrohippocampal region1.41
1.14
Trit1sAMYStriatum-like amygdalar nuclei2.57
1.88
Trit1STRStriatum2.4
2.12
Trit1STRdStriatum dorsal region1.82
1.95
Trit1STRvStriatum ventral region4.66
3.1
Trit1THThalamus13.27
13.37
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
MOD5_HUMAN_328 5 328 332 WVKNR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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