Annotation Detail for TRPM7
Basic Information Top
| Gene Symbol: | TRPM7 ( CHAK,CHAK1,FLJ20117,FLJ25718,LTRPC7,TRP-PLIK ) |
|---|---|
| Gene Full Name: | transient receptor potential cation channel, subfamily M, member 7 |
| Band: | 15q21.2 |
| Quick Links | Entrez ID:54822; OMIM: 605692; Uniprot ID:TRPM7_HUMAN; ENSEMBL ID: ENSG00000092439; HGNC ID: 17994 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.512894
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 4 / 62319 | 64 |  |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 3 / 55556 | 53 | |
| adult | 67 / 1939121 | 34 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 7 / 17290 | 404 |  |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 92 / 3360307 | 27 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 7 / 48801 | 143 | |
| brain | 22 / 1100989 | 19 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 7 / 20209 | 346 | |
| eye | 4 / 211054 | 18 | |
| heart | 1 / 89626 | 11 | |
| intestine | 7 / 234472 | 29 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 10 / 207743 | 48 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 12 / 91610 | 130 | |
| mammary gland | 12 / 153271 | 78 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 6 / 41328 | 145 | |
| pituitary gland | 3 / 16585 | 180 | |
| placenta | 6 / 280825 | 21 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 8 / 330442 | 24 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_24_P50829
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.8 ± 0.27 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.9 ± 0.07 | |
| Basal Part of Pons | 7.72 ± 0.2 | |
| Cerebellar Cortex | 8.17 ± 0.15 | |
| Cerebellar Nuclei | 7.94 ± 0.24 | |
| Claustrum | 8.24 ± 0.32 | |
| Epithalamus | 8.04 ± 0.14 | |
| Frontal Lobe | 7.8 ± 0.24 | |
| Globus Pallidus | 7.94 ± 0.25 | |
| Hypothalamus | 7.66 ± 0.16 | |
| Insula | 7.82 ± 0.18 | |
| Limbic Lobe | 7.91 ± 0.33 | |
| Mesencephalon | 7.95 ± 0.29 | |
| Myelencephalon | 7.85 ± 0.27 | |
| Occipital Lobe | 8.23 ± 0.33 | |
| Parietal Lobe | 7.89 ± 0.24 | |
| Pontine Tegmentum | 7.89 ± 0.29 | |
| Striatum | 7.98 ± 0.33 | |
| Subthalamus | 7.94 ± 0.13 | |
| Temporal Lobe | 7.78 ± 0.25 | |
| Thalamus | 7.77 ± 0.19 | |
| White Matter | 8.71 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Trpm7 | CB | Cerebellum | 21.36 | |
| 20.69 | | |||
| Trpm7 | CTX | Cerebral cortex | 66.79 | |
| 45.48 | | |||
| Trpm7 | HIP | Hippocampal region | 40.84 | |
| 49.3 | | |||
| Trpm7 | HPF | Hippocampal formation | 44.01 | |
| 42.66 | | |||
| Trpm7 | HY | Hypothalamus | 32.47 | |
| 22.72 | | |||
| Trpm7 | LSX | Lateral septal complex | 37.5 | |
| 24.24 | | |||
| Trpm7 | MB | Midbrain | 38.34 | |
| 30.26 | | |||
| Trpm7 | MY | Medulla | 35.82 | |
| 33.32 | | |||
| Trpm7 | OLF | Olfactory bulb | 68.86 | |
| 49.82 | | |||
| Trpm7 | P | Pons | 35.98 | |
| 30.13 | | |||
| Trpm7 | PAL | Pallidum | 33.7 | |
| 25.5 | | |||
| Trpm7 | RHP | Retrohippocampal region | 50.37 | |
| 34.28 | | |||
| Trpm7 | sAMY | Striatum-like amygdalar nuclei | 40.37 | |
| 24.28 | | |||
| Trpm7 | STR | Striatum | 36.33 | |
| 23.04 | | |||
| Trpm7 | STRd | Striatum dorsal region | 34.14 | |
| 22.16 | | |||
| Trpm7 | STRv | Striatum ventral region | 44.17 | |
| 26.33 | | |||
| Trpm7 | TH | Thalamus | 34.26 | |
| 26.08 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00003555 | 23 | 83 | 105 | HTEQSPTDAYGVINFQGGSHSYR | Peptide Atlas |
| TRPM7_HUMAN_351 | 23 | 351 | 373 | KTFNFGQNEALHLFQTLMECMKR | PRIDE |