AutismKB 2.0

Annotation Detail for BCAS3


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Basic Information Top
Gene Symbol:BCAS3 ( DKFZp686O1527,FLJ20128,GAOB1,MAAB,MGC4973 )
Gene Full Name: breast carcinoma amplified sequence 3
Band: 17q23.2
Quick LinksEntrez ID:54828; OMIM: 607470; Uniprot ID:BCAS3_HUMAN; ENSEMBL ID: ENSG00000141376; HGNC ID: 14347
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst0 / 623190 
fetus53 / 56401293
neonate1 / 3109732
infant1 / 2362042
juvenile5 / 5555689
adult101 / 193912152
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor9 / 9417895
cervical tumor1 / 3436629
chondrosarcoma4 / 8282348
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor27 / 263845102
glioma2 / 10688318
head and neck tumor26 / 136302190
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor3 / 10312729
lymphoma3 / 7175541
non-neoplasia7 / 9725071
normal258 / 336030776
ovarian tumor2 / 7668226
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS6 / 12568047
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor26 / 124949208
soft tissue/muscle tissue tumor9 / 12519171
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland2 / 3319760
ascites3 / 4001574
bladder1 / 2975733
blood0 / 1234780 
bone1 / 7165513
bone marrow3 / 4880161
brain159 / 1100989144
cervix1 / 4817120
connective tissue12 / 14925580
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye11 / 21105452
heart1 / 8962611
intestine5 / 23447221
kidney6 / 21177728
larynx0 / 241450 
liver4 / 20774319
lung18 / 33697453
lymph1 / 4427022
lymph node1 / 9161010
mammary gland12 / 15327178
mouth26 / 67052387
muscle8 / 10771574
nerve1 / 1576863
ovary3 / 10205129
pancreas8 / 21481237
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta14 / 28082549
prostate5 / 18934526
salivary gland0 / 201550 
skin32 / 210574151
spleen6 / 53952111
stomach2 / 9661920
testis61 / 330442184
thymus4 / 8113149
thyroid0 / 474730 
tonsil0 / 169990 
trachea7 / 52413133
umbilical cord1 / 1368073
uterus14 / 23287860
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220488_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts232.95
Adipocyte19.6
AdrenalCortex20.3
Adrenalgland22.4
Amygdala21
Appendix19.1
AtrioventricularNode14.85
BDCA4+_DentriticCells17
Bonemarrow19.35
BronchialEpithelialCells18.3
CD105+_Endothelial18.35
CD14+_Monocytes18.55
CD19+_BCells(neg._sel.)21.4
CD33+_Myeloid20.85
CD34+16.95
CD4+_Tcells21.8
CD56+_NKCells24.4
CD71+_EarlyErythroid25.85
CD8+_Tcells17.9
CardiacMyocytes22.05
Caudatenucleus17.7
Cerebellum16.05
CerebellumPeduncles23.95
CiliaryGanglion13.8
CingulateCortex20.3
Colorectaladenocarcinoma19.9
DorsalRootGanglion15
FetalThyroid19.05
Fetalbrain20.05
Fetalliver17.05
Fetallung19.75
GlobusPallidus14.45
Heart22
Hypothalamus21.6
Kidney15.75
Leukemia_chronicMyelogenousK-56218
Leukemia_promyelocytic-HL-6017.5
Leukemialymphoblastic(MOLT-4)17
Liver27.1
Lung25.25
Lymphnode17.3
Lymphoma_burkitts(Daudi)25.1
Lymphoma_burkitts(Raji)17.55
MedullaOblongata18.4
OccipitalLobe17.8
OlfactoryBulb15.65
Ovary12.95
Pancreas15.85
PancreaticIslet33.2
ParietalLobe24.75
Pituitary23.25
Placenta20.8
Pons18.75
PrefrontalCortex27.4
Prostate23.7
Salivarygland13.9
SkeletalMuscle24.65
Skin15
SmoothMuscle18.9
Spinalcord25.6
SubthalamicNucleus17.85
SuperiorCervicalGanglion21.85
TemporalLobe18
Testis38.55
TestisGermCell14.95
TestisIntersitial16.6
TestisLeydigCell19.5
TestisSeminiferousTubule17.05
Thalamus20.05
Thymus16
Thyroid25.25
Tongue19.2
Tonsil17.95
Trachea27.7
TrigeminalGanglion19.2
Uterus15.75
UterusCorpus17.55
WholeBlood20.9
Wholebrain21.9
colon19.9
pineal_day24.6
pineal_night23.82
retina26.4
small_intestine19.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P141680
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.7 ± 0.41
Basal Forebrain5.84 ± 0.19
Basal Part of Pons6.3 ± 0.37
Cerebellar Cortex5.81 ± 0.24
Cerebellar Nuclei5.75 ± 0.49
Claustrum5.95 ± 0.42
Epithalamus6.06 ± 0.28
Frontal Lobe6.08 ± 0.35
Globus Pallidus5.97 ± 0.27
Hypothalamus5.75 ± 0.28
Insula5.82 ± 0.29
Limbic Lobe5.83 ± 0.4
Mesencephalon5.96 ± 0.3
Myelencephalon5.91 ± 0.39
Occipital Lobe5.75 ± 0.36
Parietal Lobe6.02 ± 0.39
Pontine Tegmentum5.78 ± 0.41
Striatum5.61 ± 0.34
Subthalamus6.36 ± 0.22
Temporal Lobe5.99 ± 0.29
Thalamus5.99 ± 0.31
White Matter6.93 ± 0.07
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Bcas3CBCerebellum11.43
11.32
Bcas3CTXCerebral cortex34.72
24.37
Bcas3HIPHippocampal region22.37
21.79
Bcas3HPFHippocampal formation23.87
21.23
Bcas3HYHypothalamus12.99
9.56
Bcas3LSXLateral septal complex7.1
4.78
Bcas3MBMidbrain18.79
16.62
Bcas3MYMedulla28.64
30.95
Bcas3OLFOlfactory bulb33.08
25.84
Bcas3PPons26.36
28.46
Bcas3PALPallidum15.65
13.68
Bcas3RHPRetrohippocampal region27.41
21.03
Bcas3sAMYStriatum-like amygdalar nuclei10.11
6.7
Bcas3STRStriatum15.65
10.53
Bcas3STRdStriatum dorsal region16.79
11.54
Bcas3STRvStriatum ventral region19.61
12.07
Bcas3THThalamus23.71
19.29
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
BCAS3_HUMAN_590 10 590 599 SWFANNAGLK PRIDE
BCAS3_HUMAN_873 11 873 883 DVVGSGTELQR PRIDE
PAp00497158 17 517 533 LSPLPSLMVVMPLAQIK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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