AutismKB 2.0

Annotation Detail for GDAP2


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Basic Information Top
Gene Symbol:GDAP2 ( FLJ20142,dJ776P7.1 )
Gene Full Name: ganglioside induced differentiation associated protein 2
Band: 1p12
Quick LinksEntrez ID:54834; OMIM: NA; Uniprot ID:GDAP2_HUMAN; ENSEMBL ID: ENSG00000196505; HGNC ID: 18010
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus19 / 56401233
neonate0 / 310970 
infant1 / 2362042
juvenile1 / 5555617
adult70 / 193912136
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor6 / 9417863
cervical tumor1 / 3436629
chondrosarcoma0 / 828230 
colorectal tumor13 / 114246113
esophageal tumor1 / 1729057
gastrointestinal tumor1 / 1193698
germ cell tumor8 / 26384530
glioma4 / 10688337
head and neck tumor7 / 13630251
kidney tumor1 / 6895914
leukemia4 / 9584241
liver tumor3 / 9635931
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal94 / 336030727
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor12 / 12494996
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder1 / 2975733
blood4 / 12347832
bone0 / 716550 
bone marrow2 / 4880140
brain33 / 110098929
cervix3 / 4817162
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue3 / 21572213
esophagus1 / 2020949
eye3 / 21105414
heart0 / 896260 
intestine15 / 23447263
kidney8 / 21177737
larynx0 / 241450 
liver3 / 20774314
lung11 / 33697432
lymph0 / 442700 
lymph node5 / 9161054
mammary gland8 / 15327152
mouth4 / 6705259
muscle4 / 10771537
nerve0 / 157680 
ovary2 / 10205119
pancreas4 / 21481218
parathyroid1 / 2053948
pharynx3 / 4132872
pituitary gland0 / 165850 
placenta8 / 28082528
prostate1 / 1893455
salivary gland0 / 201550 
skin14 / 21057466
spleen3 / 5395255
stomach0 / 966190 
testis8 / 33044224
thymus1 / 8113112
thyroid2 / 4747342
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus8 / 23287834
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219473_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.4
Adipocyte5.35
AdrenalCortex6.2
Adrenalgland4.55
Amygdala5.6
Appendix8.05
AtrioventricularNode6.3
BDCA4+_DentriticCells6
Bonemarrow5.45
BronchialEpithelialCells5.2
CD105+_Endothelial5.35
CD14+_Monocytes6.25
CD19+_BCells(neg._sel.)5.6
CD33+_Myeloid7
CD34+6.95
CD4+_Tcells5.7
CD56+_NKCells6.45
CD71+_EarlyErythroid5.05
CD8+_Tcells4.85
CardiacMyocytes6.8
Caudatenucleus4.85
Cerebellum4.35
CerebellumPeduncles6.2
CiliaryGanglion6.65
CingulateCortex6.05
Colorectaladenocarcinoma5.3
DorsalRootGanglion8.15
FetalThyroid5.6
Fetalbrain5.35
Fetalliver4.7
Fetallung4.1
GlobusPallidus4.15
Heart6.8
Hypothalamus5.9
Kidney4.5
Leukemia_chronicMyelogenousK-5624.9
Leukemia_promyelocytic-HL-604.75
Leukemialymphoblastic(MOLT-4)4.35
Liver7.3
Lung5.8
Lymphnode4.65
Lymphoma_burkitts(Daudi)6.95
Lymphoma_burkitts(Raji)7.5
MedullaOblongata4.95
OccipitalLobe4.85
OlfactoryBulb4.45
Ovary3.7
Pancreas4.45
PancreaticIslet5.75
ParietalLobe5.8
Pituitary6.25
Placenta5.6
Pons5.2
PrefrontalCortex6.4
Prostate6.1
Salivarygland4.55
SkeletalMuscle6.7
Skin5.55
SmoothMuscle6.1
Spinalcord5.7
SubthalamicNucleus5.1
SuperiorCervicalGanglion8.45
TemporalLobe4.95
Testis4.6
TestisGermCell4.35
TestisIntersitial4.5
TestisLeydigCell5.35
TestisSeminiferousTubule4.65
Thalamus5.45
Thymus4.25
Thyroid6.45
Tongue5.7
Tonsil5.25
Trachea4.55
TrigeminalGanglion5.55
Uterus4.25
UterusCorpus4.8
WholeBlood5.9
Wholebrain4.6
colon5.4
pineal_day6.56
pineal_night6.42
retina6.45
small_intestine5.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P11915
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.26 ± 0.39
Basal Forebrain5.24 ± 0.17
Basal Part of Pons5.19 ± 0.44
Cerebellar Cortex5.23 ± 0.33
Cerebellar Nuclei5.29 ± 0.4
Claustrum5.35 ± 0.51
Epithalamus5.38 ± 0.43
Frontal Lobe5.09 ± 0.38
Globus Pallidus5.7 ± 0.23
Hypothalamus5 ± 0.34
Insula4.99 ± 0.38
Limbic Lobe5.3 ± 0.34
Mesencephalon5.23 ± 0.45
Myelencephalon5.25 ± 0.41
Occipital Lobe5.54 ± 0.4
Parietal Lobe5.24 ± 0.42
Pontine Tegmentum5.19 ± 0.44
Striatum5.51 ± 0.43
Subthalamus4.8 ± 0.37
Temporal Lobe5.14 ± 0.37
Thalamus5.35 ± 0.38
White Matter5.79 ± 0.26
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00507345 21 233 253 SLPYLPADIGNAEGEPVVPER Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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