AutismKB 2.0

Annotation Detail for SNRK


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Basic Information Top
Gene Symbol:SNRK ( DKFZp779A1866,FLJ20224,HSNFRK,KIAA0096 )
Gene Full Name: SNF related kinase
Band: 3p22.1
Quick LinksEntrez ID:54861; OMIM: 612760; Uniprot ID:SNRK_HUMAN; ENSEMBL ID: ENSG00000163788; HGNC ID: 30598
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus38 / 56401267
neonate2 / 3109764
infant2 / 2362084
juvenile4 / 5555671
adult73 / 193912137
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor1 / 1142468
esophageal tumor1 / 1729057
gastrointestinal tumor4 / 11936933
germ cell tumor16 / 26384560
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor3 / 6895943
leukemia5 / 9584252
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia1 / 9725010
normal202 / 336030760
ovarian tumor4 / 7668252
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood4 / 12347832
bone1 / 7165513
bone marrow4 / 4880181
brain73 / 110098966
cervix0 / 481710 
connective tissue4 / 14925526
ear1 / 1621261
embryonic tissue2 / 2157229
esophagus1 / 2020949
eye5 / 21105423
heart5 / 8962655
intestine8 / 23447234
kidney16 / 21177775
larynx0 / 241450 
liver5 / 20774324
lung16 / 33697447
lymph0 / 442700 
lymph node7 / 9161076
mammary gland0 / 1532710 
mouth1 / 6705214
muscle7 / 10771564
nerve3 / 15768190
ovary4 / 10205139
pancreas6 / 21481227
parathyroid7 / 20539340
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta17 / 28082560
prostate6 / 18934531
salivary gland0 / 201550 
skin5 / 21057423
spleen3 / 5395255
stomach4 / 9661941
testis15 / 33044245
thymus10 / 81131123
thyroid0 / 474730 
tonsil0 / 169990 
trachea8 / 52413152
umbilical cord2 / 13680146
uterus23 / 23287898
vascular10 / 51780193
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 209481_at
Cell line Expression level Expression bar
721_B_lymphoblasts113.4
Adipocyte13.35
AdrenalCortex18.85
Adrenalgland19.25
Amygdala184.05
Appendix102.45
AtrioventricularNode11.5
BDCA4+_DentriticCells213.95
Bonemarrow65.55
BronchialEpithelialCells36.95
CD105+_Endothelial74.05
CD14+_Monocytes297.95
CD19+_BCells(neg._sel.)365.9
CD33+_Myeloid391.6
CD34+217.95
CD4+_Tcells1078.5
CD56+_NKCells1090.2
CD71+_EarlyErythroid61.85
CD8+_Tcells1154.9
CardiacMyocytes15.95
Caudatenucleus40.7
Cerebellum107.15
CerebellumPeduncles164.25
CiliaryGanglion19.2
CingulateCortex53.1
Colorectaladenocarcinoma15.2
DorsalRootGanglion24.3
FetalThyroid75
Fetalbrain85.95
Fetalliver30.8
Fetallung241.8
GlobusPallidus39.85
Heart15.1
Hypothalamus128.7
Kidney20.55
Leukemia_chronicMyelogenousK-5629.9
Leukemia_promyelocytic-HL-6015.85
Leukemialymphoblastic(MOLT-4)39.75
Liver13.8
Lung43.1
Lymphnode138
Lymphoma_burkitts(Daudi)26.15
Lymphoma_burkitts(Raji)17.05
MedullaOblongata65.9
OccipitalLobe72.7
OlfactoryBulb63.3
Ovary9.05
Pancreas16.95
PancreaticIslet39.7
ParietalLobe30.7
Pituitary98.75
Placenta123.5
Pons23.85
PrefrontalCortex170.2
Prostate54.6
Salivarygland46.35
SkeletalMuscle13.9
Skin40.95
SmoothMuscle27.45
Spinalcord62.15
SubthalamicNucleus39.7
SuperiorCervicalGanglion38.4
TemporalLobe32.5
Testis17.6
TestisGermCell38.8
TestisIntersitial27.05
TestisLeydigCell29.1
TestisSeminiferousTubule19.4
Thalamus96.9
Thymus145.1
Thyroid175.35
Tongue27.4
Tonsil37.8
Trachea57.2
TrigeminalGanglion14.75
Uterus210.3
UterusCorpus26.2
WholeBlood993.05
Wholebrain77.85
colon90.5
pineal_day79.04
pineal_night92.72
retina115.475
small_intestine146.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P211985
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.79 ± 0.44
Basal Forebrain4.85 ± 0.36
Basal Part of Pons5.3 ± 0.38
Cerebellar Cortex5.46 ± 0.27
Cerebellar Nuclei5.29 ± 0.57
Claustrum4.44 ± 0.77
Epithalamus4.73 ± 0.59
Frontal Lobe5.01 ± 0.57
Globus Pallidus4.61 ± 0.31
Hypothalamus4.82 ± 0.72
Insula5.11 ± 0.33
Limbic Lobe4.74 ± 0.64
Mesencephalon5.02 ± 0.51
Myelencephalon4.94 ± 0.62
Occipital Lobe4.99 ± 0.55
Parietal Lobe5.04 ± 0.51
Pontine Tegmentum4.87 ± 0.47
Striatum4.53 ± 0.44
Subthalamus5.49 ± 0.16
Temporal Lobe5 ± 0.5
Thalamus5.22 ± 0.43
White Matter3.44 ± 0.44
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
SnrkCBCerebellum100
100
SnrkCTXCerebral cortex54.73
46.33
SnrkHIPHippocampal region37.35
49.91
SnrkHPFHippocampal formation49.44
57.1
SnrkHYHypothalamus36.64
33.82
SnrkLSXLateral septal complex22.45
17.26
SnrkMBMidbrain49.13
52.25
SnrkMYMedulla56.47
75.06
SnrkOLFOlfactory bulb60.18
88.15
SnrkPPons50.01
65.04
SnrkPALPallidum36.62
39.55
SnrkRHPRetrohippocampal region74.81
72.03
SnrksAMYStriatum-like amygdalar nuclei26.47
22.09
SnrkSTRStriatum19.05
15.94
SnrkSTRdStriatum dorsal region16.47
14.2
SnrkSTRvStriatum ventral region22.49
17.67
SnrkTHThalamus68.54
72.18
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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