AutismKB 2.0

Annotation Detail for C9orf167


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Basic Information Top
Gene Symbol:C9orf167 ( FLJ20245 )
Gene Full Name: chromosome 9 open reading frame 167
Band: 9q34.3
Quick LinksEntrez ID:54863; OMIM: NA; Uniprot ID:CI167_HUMAN; ENSEMBL ID: ENSG00000198113; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult15 / 19391217
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor7 / 11936958
germ cell tumor0 / 2638450 
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor1 / 6895914
leukemia5 / 9584252
liver tumor2 / 9635920
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal20 / 33603075
ovarian tumor1 / 7668213
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites2 / 4001549
bladder0 / 297570 
blood1 / 1234788
bone0 / 716550 
bone marrow1 / 4880120
brain1 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine9 / 23447238
kidney1 / 2117774
larynx0 / 241450 
liver2 / 2077439
lung5 / 33697414
lymph0 / 442700 
lymph node8 / 9161087
mammary gland2 / 15327113
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas4 / 21481218
parathyroid1 / 2053948
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate2 / 18934510
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach8 / 9661982
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus1 / 2328784
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219620_x_at
Cell line Expression level Expression bar
721_B_lymphoblasts10.8
Adipocyte10.75
AdrenalCortex19.15
Adrenalgland9.95
Amygdala10.65
Appendix13.15
AtrioventricularNode18.5
BDCA4+_DentriticCells10.9
Bonemarrow13.45
BronchialEpithelialCells13.4
CD105+_Endothelial12.35
CD14+_Monocytes136.95
CD19+_BCells(neg._sel.)29.75
CD33+_Myeloid44.7
CD34+14.3
CD4+_Tcells7.35
CD56+_NKCells69.15
CD71+_EarlyErythroid9.9
CD8+_Tcells8.45
CardiacMyocytes48.15
Caudatenucleus10.35
Cerebellum8.65
CerebellumPeduncles12.15
CiliaryGanglion16.1
CingulateCortex11.65
Colorectaladenocarcinoma14.05
DorsalRootGanglion11.75
FetalThyroid61.75
Fetalbrain8.95
Fetalliver17.7
Fetallung15.55
GlobusPallidus9.3
Heart35.45
Hypothalamus10.55
Kidney11.75
Leukemia_chronicMyelogenousK-56229.45
Leukemia_promyelocytic-HL-608.65
Leukemialymphoblastic(MOLT-4)8.35
Liver17.75
Lung11.7
Lymphnode9.15
Lymphoma_burkitts(Daudi)14.75
Lymphoma_burkitts(Raji)13.95
MedullaOblongata9.3
OccipitalLobe9.4
OlfactoryBulb8.7
Ovary10.75
Pancreas12.3
PancreaticIslet11.4
ParietalLobe11.35
Pituitary12.45
Placenta10.95
Pons12.15
PrefrontalCortex11.2
Prostate11.55
Salivarygland13.15
SkeletalMuscle17.85
Skin15.15
SmoothMuscle18.85
Spinalcord13.1
SubthalamicNucleus12.5
SuperiorCervicalGanglion13
TemporalLobe12.35
Testis9.15
TestisGermCell8.6
TestisIntersitial9
TestisLeydigCell13.25
TestisSeminiferousTubule13.65
Thalamus14.25
Thymus8.25
Thyroid12.85
Tongue16.25
Tonsil11
Trachea12.8
TrigeminalGanglion19.6
Uterus7.2
UterusCorpus9.55
WholeBlood26.25
Wholebrain8.6
colon10.55
pineal_day11
pineal_night10.62
retina13.675
small_intestine10.05
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P147109
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala1.95 ± 1.01
Basal Forebrain1.43 ± 0.37
Basal Part of Pons1.45 ± 0.53
Cerebellar Cortex1.38 ± 0.53
Cerebellar Nuclei2.14 ± 0.44
Claustrum2.26 ± 0.73
Epithalamus1.36 ± 0.72
Frontal Lobe1.54 ± 0.68
Globus Pallidus2.56 ± 0.65
Hypothalamus1.45 ± 0.66
Insula1.25 ± 0.38
Limbic Lobe1.61 ± 0.77
Mesencephalon1.86 ± 0.73
Myelencephalon1.67 ± 0.68
Occipital Lobe1.71 ± 0.6
Parietal Lobe1.68 ± 0.71
Pontine Tegmentum1.64 ± 0.67
Striatum1.92 ± 0.63
Subthalamus1.97 ± 0.25
Temporal Lobe1.48 ± 0.6
Thalamus1.77 ± 0.63
White Matter1.9 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
A830007P12RikCBCerebellum0.81
1.15
A830007P12RikCTXCerebral cortex0.25
0.52
A830007P12RikHIPHippocampal region0.2
0.49
A830007P12RikHPFHippocampal formation0.21
0.46
A830007P12RikHYHypothalamus0.94
1.25
A830007P12RikLSXLateral septal complex0.33
0.21
A830007P12RikMBMidbrain0.17
0.28
A830007P12RikMYMedulla0.49
0.78
A830007P12RikOLFOlfactory bulb0.49
0.88
A830007P12RikPPons0.59
1.2
A830007P12RikPALPallidum0.31
0.87
A830007P12RikRHPRetrohippocampal region0.2
0.28
A830007P12RiksAMYStriatum-like amygdalar nuclei0.48
0.54
A830007P12RikSTRStriatum0.25
0.41
A830007P12RikSTRdStriatum dorsal region0.15
0.37
A830007P12RikSTRvStriatum ventral region0.47
0.68
A830007P12RikTHThalamus0.25
0.49
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CI167_HUMAN_328 14 328 341 SAEAAAAQAEEDLR PRIDE

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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