AutismKB 2.0

Annotation Detail for RETSAT


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Basic Information Top
Gene Symbol:RETSAT ( FLJ20296 )
Gene Full Name: retinol saturase (all-trans-retinol 13,14-reductase)
Band: 2p11.2
Quick LinksEntrez ID:54884; OMIM: NA; Uniprot ID:RETST_HUMAN; ENSEMBL ID: ENSG00000042445; HGNC ID: 25991
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus18 / 56401231
neonate2 / 3109764
infant0 / 236200 
juvenile6 / 55556107
adult104 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor7 / 9417874
cervical tumor6 / 34366174
chondrosarcoma6 / 8282372
colorectal tumor14 / 114246122
esophageal tumor3 / 17290173
gastrointestinal tumor10 / 11936983
germ cell tumor12 / 26384545
glioma2 / 10688318
head and neck tumor41 / 136302300
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor5 / 9635951
lung tumor2 / 10312719
lymphoma7 / 7175597
non-neoplasia18 / 97250185
normal282 / 336030783
ovarian tumor8 / 76682104
pancreatic tumor6 / 10461657
primitive neuroectodermal tumor of the CNS10 / 12568079
prostate cancer4 / 10268038
retinoblastoma2 / 4635643
skin tumor12 / 12494996
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue7 / 13106534
adrenal gland7 / 33197210
ascites7 / 40015174
bladder1 / 2975733
blood2 / 12347816
bone3 / 7165541
bone marrow1 / 4880120
brain102 / 110098992
cervix6 / 48171124
connective tissue17 / 149255113
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus4 / 20209197
eye15 / 21105471
heart3 / 8962633
intestine40 / 234472170
kidney38 / 211777179
larynx0 / 241450 
liver13 / 20774362
lung12 / 33697435
lymph2 / 4427045
lymph node4 / 9161043
mammary gland11 / 15327171
mouth43 / 67052641
muscle5 / 10771546
nerve2 / 15768126
ovary12 / 102051117
pancreas9 / 21481241
parathyroid1 / 2053948
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta12 / 28082542
prostate21 / 189345110
salivary gland0 / 201550 
skin25 / 210574118
spleen7 / 53952129
stomach4 / 9661941
testis50 / 330442151
thymus15 / 81131184
thyroid4 / 4747384
tonsil0 / 169990 
trachea12 / 52413228
umbilical cord2 / 13680146
uterus13 / 23287855
vascular5 / 5178096
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218124_at
Cell line Expression level Expression bar
721_B_lymphoblasts28.6
Adipocyte191.95
AdrenalCortex16.05
Adrenalgland31.1
Amygdala16.6
Appendix13.95
AtrioventricularNode10.3
BDCA4+_DentriticCells31.4
Bonemarrow11.35
BronchialEpithelialCells33.7
CD105+_Endothelial12.6
CD14+_Monocytes16.45
CD19+_BCells(neg._sel.)12.75
CD33+_Myeloid17.35
CD34+16.95
CD4+_Tcells23.3
CD56+_NKCells17.9
CD71+_EarlyErythroid10.4
CD8+_Tcells22.75
CardiacMyocytes16.9
Caudatenucleus12.15
Cerebellum10.55
CerebellumPeduncles13.8
CiliaryGanglion10.2
CingulateCortex13.2
Colorectaladenocarcinoma15.05
DorsalRootGanglion10.4
FetalThyroid16.95
Fetalbrain11.25
Fetalliver21.05
Fetallung10.6
GlobusPallidus9.95
Heart17.9
Hypothalamus23.45
Kidney19.1
Leukemia_chronicMyelogenousK-56210.45
Leukemia_promyelocytic-HL-6011.05
Leukemialymphoblastic(MOLT-4)10.8
Liver47.6
Lung26.7
Lymphnode11.8
Lymphoma_burkitts(Daudi)15
Lymphoma_burkitts(Raji)17.55
MedullaOblongata12.55
OccipitalLobe12.5
OlfactoryBulb10.8
Ovary8.2
Pancreas16.6
PancreaticIslet18
ParietalLobe13.65
Pituitary14.4
Placenta11.75
Pons13
PrefrontalCortex17.2
Prostate19.1
Salivarygland10.9
SkeletalMuscle15.8
Skin10.7
SmoothMuscle17.3
Spinalcord14.75
SubthalamicNucleus12.5
SuperiorCervicalGanglion14.85
TemporalLobe11.7
Testis12.35
TestisGermCell18.55
TestisIntersitial11.35
TestisLeydigCell13.55
TestisSeminiferousTubule11.6
Thalamus13.95
Thymus10.9
Thyroid83.5
Tongue17.2
Tonsil11.9
Trachea13.65
TrigeminalGanglion17.9
Uterus11.45
UterusCorpus10.8
WholeBlood13.55
Wholebrain22.15
colon119.1
pineal_day32.2
pineal_night30.38
retina29.475
small_intestine155.6
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10902_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.54 ± 0.78
Basal Forebrain4.64 ± 0.74
Basal Part of Pons4.41 ± 0.59
Cerebellar Cortex4.49 ± 0.31
Cerebellar Nuclei4.61 ± 0.61
Claustrum4.58 ± 0.44
Epithalamus5.14 ± 0.34
Frontal Lobe4.65 ± 0.5
Globus Pallidus5.67 ± 0.37
Hypothalamus4.32 ± 0.48
Insula4.3 ± 0.5
Limbic Lobe4.59 ± 0.46
Mesencephalon4.79 ± 0.42
Myelencephalon4.69 ± 0.47
Occipital Lobe4.71 ± 0.49
Parietal Lobe4.56 ± 0.42
Pontine Tegmentum4.74 ± 0.51
Striatum4.71 ± 0.48
Subthalamus4.49 ± 0.45
Temporal Lobe4.57 ± 0.4
Thalamus4.79 ± 0.43
White Matter5.99 ± 0.26
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
RetsatCBCerebellum2.64
3.6
RetsatCTXCerebral cortex1.17
1.29
RetsatHIPHippocampal region3.49
2.98
RetsatHPFHippocampal formation4.33
3.59
RetsatHYHypothalamus4.27
4.5
RetsatLSXLateral septal complex0
0
RetsatMBMidbrain4.65
5.91
RetsatMYMedulla4.12
5.75
RetsatOLFOlfactory bulb5.55
4.36
RetsatPPons7.3
8.61
RetsatPALPallidum3.65
2.91
RetsatRHPRetrohippocampal region6.13
4.66
RetsatsAMYStriatum-like amygdalar nuclei4.71
3.38
RetsatSTRStriatum2.19
1.77
RetsatSTRdStriatum dorsal region0.75
0.57
RetsatSTRvStriatum ventral region6.45
5.21
RetsatTHThalamus3.22
2.83
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00041125 32 338 369 KGHELVNIYCPIVVSNAGLFNTYEHLLPGNAR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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