Annotation Detail for MTMR10
Basic Information Top
| Gene Symbol: | MTMR10 ( FLJ20313 ) |
|---|---|
| Gene Full Name: | myotubularin related protein 10 |
| Band: | 15q13.3 |
| Quick Links | Entrez ID:54893; OMIM: NA; Uniprot ID:MTMRA_HUMAN; ENSEMBL ID: ENSG00000166912; HGNC ID: 25999 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.30141
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 51 / 564012 | 90 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 |  |
| adult | 69 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 8 / 263845 | 30 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 176 / 3360307 | 52 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 6 / 90257 | 66 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 7 / 40015 | 174 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 40 / 1100989 | 36 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 13 / 211054 | 61 | |
| heart | 5 / 89626 | 55 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 9 / 91610 | 98 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 24 / 280825 | 85 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 10 / 210574 | 47 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 6 / 330442 | 18 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 11 / 232878 | 47 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_773_PI416379584
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.88 ± 0.68 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.47 ± 0.39 | |
| Basal Part of Pons | 7.14 ± 0.45 | |
| Cerebellar Cortex | 6.58 ± 0.22 | |
| Cerebellar Nuclei | 8.05 ± 0.74 | |
| Claustrum | 6.88 ± 0.5 | |
| Epithalamus | 7.17 ± 0.82 | |
| Frontal Lobe | 7.14 ± 0.69 | |
| Globus Pallidus | 8.85 ± 0.5 | |
| Hypothalamus | 7.04 ± 0.55 | |
| Insula | 6.79 ± 0.46 | |
| Limbic Lobe | 6.67 ± 0.65 | |
| Mesencephalon | 7.38 ± 0.72 | |
| Myelencephalon | 7.29 ± 0.65 | |
| Occipital Lobe | 7.49 ± 0.52 | |
| Parietal Lobe | 7.28 ± 0.61 | |
| Pontine Tegmentum | 7.42 ± 0.52 | |
| Striatum | 7.93 ± 0.54 | |
| Subthalamus | 7.73 ± 0.71 | |
| Temporal Lobe | 6.85 ± 0.6 | |
| Thalamus | 7.68 ± 0.42 | |
| White Matter | 9.52 ± 0.17 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| BB128963 | CB | Cerebellum | 0.28 | |
| 0.65 | | |||
| BB128963 | CTX | Cerebral cortex | 3.07 | |
| 2.32 | | |||
| BB128963 | HIP | Hippocampal region | 10.05 | |
| 9.74 | | |||
| BB128963 | HPF | Hippocampal formation | 9.98 | |
| 9.11 | | |||
| BB128963 | HY | Hypothalamus | 3.02 | |
| 4.52 | | |||
| BB128963 | LSX | Lateral septal complex | 0.38 | |
| 0.46 | | |||
| BB128963 | MB | Midbrain | 1.45 | |
| 2.52 | | |||
| BB128963 | MY | Medulla | 0.38 | |
| 1.08 | | |||
| BB128963 | OLF | Olfactory bulb | 4.44 | |
| 3.64 | | |||
| BB128963 | P | Pons | 2.07 | |
| 4.63 | | |||
| BB128963 | PAL | Pallidum | 1.24 | |
| 1.66 | | |||
| BB128963 | RHP | Retrohippocampal region | 10.41 | |
| 8.77 | | |||
| BB128963 | sAMY | Striatum-like amygdalar nuclei | 5.24 | |
| 4.13 | | |||
| BB128963 | STR | Striatum | 1.99 | |
| 1.93 | | |||
| BB128963 | STRd | Striatum dorsal region | 1.91 | |
| 1.58 | | |||
| BB128963 | STRv | Striatum ventral region | 1.5 | |
| 3.02 | | |||
| BB128963 | TH | Thalamus | 3.13 | |
| 2.44 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00096616 | 24 | 92 | 115 | NLLLGEHDVPLTCIEQIVTVNDHK | Peptide Atlas |