Annotation Detail for CHCHD3
Basic Information Top
| Gene Symbol: | CHCHD3 ( FLJ20420 ) |
|---|---|
| Gene Full Name: | coiled-coil-helix-coiled-coil-helix domain containing 3 |
| Band: | 7q32.3-q33 |
| Quick Links | Entrez ID:54927; OMIM: NA; Uniprot ID:CHCH3_HUMAN; ENSEMBL ID: ENSG00000106554; HGNC ID: 21906 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.655010
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 8 / 62319 | 128 | |
| fetus | 29 / 564012 | 51 | |
| neonate | 0 / 31097 | 0 | |
| infant | 7 / 23620 | 296 |  |
| juvenile | 6 / 55556 | 107 | |
| adult | 156 / 1939121 | 80 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 4 / 12794 | 312 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 8 / 94178 | 84 | |
| cervical tumor | 6 / 34366 | 174 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 12 / 114246 | 105 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 16 / 119369 | 134 | |
| germ cell tumor | 16 / 263845 | 60 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 6 / 136302 | 44 |  |
| kidney tumor | 7 / 68959 | 101 | |
| leukemia | 6 / 95842 | 62 | |
| liver tumor | 9 / 96359 | 93 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 6 / 71755 | 83 | |
| non-neoplasia | 1 / 97250 | 10 |  |
| normal | 180 / 3360307 | 53 | |
| ovarian tumor | 6 / 76682 | 78 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 25 / 125680 | 198 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 12 / 46356 | 258 | |
| skin tumor | 23 / 124949 | 184 | |
| soft tissue/muscle tissue tumor | 34 / 125191 | 271 | |
| uterine tumor | 5 / 90257 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 5 / 33197 | 150 | |
| ascites | 7 / 40015 | 174 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 7 / 71655 | 97 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 51 / 1100989 | 46 | |
| cervix | 8 / 48171 | 166 | |
| connective tissue | 28 / 149255 | 187 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 18 / 211054 | 85 | |
| heart | 17 / 89626 | 189 | |
| intestine | 24 / 234472 | 102 | |
| kidney | 15 / 211777 | 70 | |
| larynx | 2 / 24145 | 82 | |
| liver | 12 / 207743 | 57 | |
| lung | 18 / 336974 | 53 | |
| lymph | 2 / 44270 | 45 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 13 / 153271 | 84 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 22 / 107715 | 204 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 9 / 102051 | 88 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 3 / 20539 | 146 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 24 / 280825 | 85 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 35 / 210574 | 166 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 8 / 96619 | 82 | |
| testis | 13 / 330442 | 39 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 18 / 232878 | 77 | |
| vascular | 2 / 51780 | 38 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 217972_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 279.8 | |
| Adipocyte | 75.7 | |
| AdrenalCortex | 37.45 | |
| Adrenalgland | 49.45 | |
| Amygdala | 63.15 | |
| Appendix | 53.95 | |
| AtrioventricularNode | 23.4 | |
| BDCA4+_DentriticCells | 155.8 | |
| Bonemarrow | 53.5 | |
| BronchialEpithelialCells | 167.45 | |
| CD105+_Endothelial | 496 | |
| CD14+_Monocytes | 95.1 | |
| CD19+_BCells(neg._sel.) | 108.65 | |
| CD33+_Myeloid | 150.15 | |
| CD34+ | 217.05 | |
| CD4+_Tcells | 49.6 | |
| CD56+_NKCells | 155.7 | |
| CD71+_EarlyErythroid | 270.1 | |
| CD8+_Tcells | 52 | |
| CardiacMyocytes | 74.2 | |
| Caudatenucleus | 43.4 | |
| Cerebellum | 42.45 | |
| CerebellumPeduncles | 46 | |
| CiliaryGanglion | 37.65 | |
| CingulateCortex | 51.25 | |
| Colorectaladenocarcinoma | 226.65 | |
| DorsalRootGanglion | 40.8 | |
| FetalThyroid | 60.15 | |
| Fetalbrain | 54.55 | |
| Fetalliver | 52 | |
| Fetallung | 52.4 | |
| GlobusPallidus | 38.6 | |
| Heart | 114.8 | |
| Hypothalamus | 55.9 | |
| Kidney | 49.35 | |
| Leukemia_chronicMyelogenousK-562 | 247.65 | |
| Leukemia_promyelocytic-HL-60 | 182.35 | |
| Leukemialymphoblastic(MOLT-4) | 330.5 | |
| Liver | 31.95 | |
| Lung | 67.35 | |
| Lymphnode | 46.85 | |
| Lymphoma_burkitts(Daudi) | 78.85 | |
| Lymphoma_burkitts(Raji) | 191 | |
| MedullaOblongata | 47.5 | |
| OccipitalLobe | 41.75 | |
| OlfactoryBulb | 42.55 | |
| Ovary | 22.1 | |
| Pancreas | 43.45 | |
| PancreaticIslet | 44.6 | |
| ParietalLobe | 54.8 | |
| Pituitary | 65 | |
| Placenta | 53.4 | |
| Pons | 49.85 | |
| PrefrontalCortex | 55.95 | |
| Prostate | 59.2 | |
| Salivarygland | 48.6 | |
| SkeletalMuscle | 88.95 | |
| Skin | 43.6 | |
| SmoothMuscle | 89.5 | |
| Spinalcord | 78.2 | |
| SubthalamicNucleus | 46.75 | |
| SuperiorCervicalGanglion | 62.75 | |
| TemporalLobe | 46.1 | |
| Testis | 44.9 | |
| TestisGermCell | 34.75 | |
| TestisIntersitial | 32.55 | |
| TestisLeydigCell | 51.45 | |
| TestisSeminiferousTubule | 37.05 | |
| Thalamus | 46.35 | |
| Thymus | 52.75 | |
| Thyroid | 158 | |
| Tongue | 66.2 | |
| Tonsil | 53 | |
| Trachea | 27.6 | |
| TrigeminalGanglion | 38.9 | |
| Uterus | 42.85 | |
| UterusCorpus | 46 | |
| WholeBlood | 42.7 | |
| Wholebrain | 49.25 | |
| colon | 262.4 | |
| pineal_day | 85.78 | |
| pineal_night | 75.1 | |
| retina | 104.275 | |
| small_intestine | 225.05 | |
- Probe name: A_23_P251927
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.52 ± 0.39 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.41 ± 0.31 | |
| Basal Part of Pons | 5.64 ± 0.41 | |
| Cerebellar Cortex | 5.53 ± 0.37 | |
| Cerebellar Nuclei | 5.65 ± 0.41 | |
| Claustrum | 5.07 ± 0.74 | |
| Epithalamus | 5.61 ± 0.32 | |
| Frontal Lobe | 5.68 ± 0.38 | |
| Globus Pallidus | 5.39 ± 0.42 | |
| Hypothalamus | 5.74 ± 0.25 | |
| Insula | 5.66 ± 0.29 | |
| Limbic Lobe | 5.42 ± 0.53 | |
| Mesencephalon | 5.57 ± 0.46 | |
| Myelencephalon | 5.46 ± 0.46 | |
| Occipital Lobe | 5.21 ± 0.46 | |
| Parietal Lobe | 5.52 ± 0.42 | |
| Pontine Tegmentum | 5.48 ± 0.46 | |
| Striatum | 5.43 ± 0.36 | |
| Subthalamus | 5.7 ± 0.49 | |
| Temporal Lobe | 5.64 ± 0.39 | |
| Thalamus | 5.42 ± 0.33 | |
| White Matter | 4.63 ± 0.69 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Chchd3 | CB | Cerebellum | 36.1 | |
| 86.63 | | |||
| Chchd3 | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Chchd3 | HIP | Hippocampal region | 88.8 | |
| 100 | | |||
| Chchd3 | HPF | Hippocampal formation | 89.19 | |
| 100 | | |||
| Chchd3 | HY | Hypothalamus | 76.59 | |
| 74.26 | | |||
| Chchd3 | LSX | Lateral septal complex | 99.92 | |
| 87.06 | | |||
| Chchd3 | MB | Midbrain | 71.11 | |
| 81.58 | | |||
| Chchd3 | MY | Medulla | 61.91 | |
| 81.29 | | |||
| Chchd3 | OLF | Olfactory bulb | 89.38 | |
| 86.37 | | |||
| Chchd3 | P | Pons | 62.62 | |
| 84.76 | | |||
| Chchd3 | PAL | Pallidum | 85.47 | |
| 89.38 | | |||
| Chchd3 | RHP | Retrohippocampal region | 90.59 | |
| 89.63 | | |||
| Chchd3 | sAMY | Striatum-like amygdalar nuclei | 72.34 | |
| 67.01 | | |||
| Chchd3 | STR | Striatum | 100 | |
| 90.21 | | |||
| Chchd3 | STRd | Striatum dorsal region | 100 | |
| 91.36 | | |||
| Chchd3 | STRv | Striatum ventral region | 100 | |
| 97.16 | | |||
| Chchd3 | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CHCH3_HUMAN_0 | 0 | 0 | 0 | YSGAYGASVSDEELK | PRIDE |
| CHCH3_HUMAN_49 | 15 | 49 | 63 | YSGAYGASVSDEELK | PRIDE |
| PAp00001342 | 16 | 204 | 219 | CSALATQYMHCVNHAK | Peptide Atlas |