AutismKB 2.0

Annotation Detail for C12orf41


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Basic Information Top
Gene Symbol:C12orf41 ( FLJ12670,FLJ20436 )
Gene Full Name: chromosome 12 open reading frame 41
Band: 12q13.11
Quick LinksEntrez ID:54934; OMIM: NA; Uniprot ID:CL041_HUMAN; ENSEMBL ID: ENSG00000139620; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body2 / 7076128
blastocyst2 / 6231932
fetus15 / 56401226
neonate1 / 3109732
infant0 / 236200 
juvenile1 / 5555617
adult51 / 193912126
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor4 / 9417842
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor10 / 11424687
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor22 / 26384583
glioma6 / 10688356
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia3 / 9584231
liver tumor4 / 9635941
lung tumor11 / 103127106
lymphoma7 / 7175597
non-neoplasia4 / 9725041
normal86 / 336030725
ovarian tumor6 / 7668278
pancreatic tumor5 / 10461647
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer4 / 10268038
retinoblastoma6 / 46356129
skin tumor4 / 12494932
soft tissue/muscle tissue tumor13 / 125191103
uterine tumor5 / 9025755
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder2 / 2975767
blood4 / 12347832
bone1 / 7165513
bone marrow1 / 4880120
brain49 / 110098944
cervix3 / 4817162
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue4 / 21572218
esophagus0 / 202090 
eye10 / 21105447
heart2 / 8962622
intestine11 / 23447246
kidney4 / 21177718
larynx0 / 241450 
liver6 / 20774328
lung14 / 33697441
lymph5 / 44270112
lymph node2 / 9161021
mammary gland6 / 15327139
mouth2 / 6705229
muscle8 / 10771574
nerve1 / 1576863
ovary7 / 10205168
pancreas12 / 21481255
parathyroid0 / 205390 
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta14 / 28082549
prostate5 / 18934526
salivary gland4 / 20155198
skin5 / 21057423
spleen0 / 539520 
stomach0 / 966190 
testis12 / 33044236
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus15 / 23287864
vascular2 / 5178038
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 221821_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts32.8
Adipocyte4.8
AdrenalCortex4.85
Adrenalgland4
Amygdala5.1
Appendix4.85
AtrioventricularNode3.6
BDCA4+_DentriticCells42.1
Bonemarrow4.8
BronchialEpithelialCells6.9
CD105+_Endothelial28.85
CD14+_Monocytes14.1
CD19+_BCells(neg._sel.)92.8
CD33+_Myeloid28.75
CD34+74.5
CD4+_Tcells54.25
CD56+_NKCells50.5
CD71+_EarlyErythroid12.65
CD8+_Tcells56.9
CardiacMyocytes5.95
Caudatenucleus4.35
Cerebellum3.95
CerebellumPeduncles5.45
CiliaryGanglion3.3
CingulateCortex4.7
Colorectaladenocarcinoma6.8
DorsalRootGanglion3.7
FetalThyroid4.7
Fetalbrain5.8
Fetalliver4.15
Fetallung4.65
GlobusPallidus3.45
Heart6.2
Hypothalamus7.4
Kidney3.85
Leukemia_chronicMyelogenousK-56210.1
Leukemia_promyelocytic-HL-607.1
Leukemialymphoblastic(MOLT-4)26.35
Liver6.25
Lung5.4
Lymphnode8.15
Lymphoma_burkitts(Daudi)10.95
Lymphoma_burkitts(Raji)6.8
MedullaOblongata4.35
OccipitalLobe4.25
OlfactoryBulb3.85
Ovary3.2
Pancreas3.85
PancreaticIslet7.5
ParietalLobe4.9
Pituitary5.65
Placenta15.75
Pons4.45
PrefrontalCortex6.2
Prostate5.75
Salivarygland3.95
SkeletalMuscle5.3
Skin3.65
SmoothMuscle5.55
Spinalcord5.2
SubthalamicNucleus4.25
SuperiorCervicalGanglion5.3
TemporalLobe4.2
Testis20.1
TestisGermCell13.4
TestisIntersitial5.05
TestisLeydigCell4.7
TestisSeminiferousTubule4.45
Thalamus4.9
Thymus11.7
Thyroid6.75
Tongue4.7
Tonsil4.7
Trachea3.95
TrigeminalGanglion4.9
Uterus5.95
UterusCorpus4.15
WholeBlood6.35
Wholebrain4.35
colon4.95
pineal_day15.06
pineal_night16.66
retina21.875
small_intestine7.95
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_412_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala4.59 ± 0.53
Basal Forebrain4.42 ± 0.53
Basal Part of Pons4.82 ± 0.5
Cerebellar Cortex5.02 ± 0.19
Cerebellar Nuclei4.55 ± 0.48
Claustrum4.64 ± 0.91
Epithalamus4.43 ± 0.44
Frontal Lobe4.37 ± 0.51
Globus Pallidus4.68 ± 0.54
Hypothalamus4.22 ± 0.47
Insula4.25 ± 0.49
Limbic Lobe4.65 ± 0.45
Mesencephalon4.48 ± 0.54
Myelencephalon4.5 ± 0.48
Occipital Lobe4.88 ± 0.42
Parietal Lobe4.57 ± 0.46
Pontine Tegmentum4.57 ± 0.58
Striatum4.38 ± 0.49
Subthalamus4.55 ± 0.33
Temporal Lobe4.49 ± 0.45
Thalamus4.41 ± 0.57
White Matter6.05 ± 0.36
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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