Annotation Detail for SARS2
Basic Information Top
| Gene Symbol: | SARS2 ( FLJ20450,SARS,SARSM,SERS,SYS,SerRS,SerRSmt,mtSerRS ) |
|---|---|
| Gene Full Name: | seryl-tRNA synthetase 2, mitochondrial |
| Band: | 19q13.2 |
| Quick Links | Entrez ID:54938; OMIM: 612804; Uniprot ID:SYSM_HUMAN; ENSEMBL ID: ENSG00000104835; HGNC ID: 17697 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.709416
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 5 / 55556 | 89 |  |
| adult | 71 / 1939121 | 36 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 9 / 94178 | 95 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 2 / 17290 | 115 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 10 / 106883 | 93 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 12 / 95842 | 125 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 6 / 103127 | 58 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 99 / 3360307 | 29 | |
| ovarian tumor | 9 / 76682 | 117 | |
| pancreatic tumor | 13 / 104616 | 124 | |
| primitive neuroectodermal tumor of the CNS | 19 / 125680 | 151 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 3 / 46356 | 64 | |
| skin tumor | 8 / 124949 | 64 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 4 / 40015 | 99 | |
| bladder | 0 / 29757 | 0 | |
| blood | 14 / 123478 | 113 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 50 / 1100989 | 45 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 2 / 20209 | 98 | |
| eye | 6 / 211054 | 28 | |
| heart | 1 / 89626 | 11 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 9 / 336974 | 26 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 10 / 153271 | 65 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 14 / 214812 | 65 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 9 / 210574 | 42 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 1 / 96619 | 10 | |
| testis | 4 / 330442 | 12 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 3 / 16999 | 176 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 218702_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 9.75 | |
| Adipocyte | 4.45 | |
| AdrenalCortex | 4.7 | |
| Adrenalgland | 4 | |
| Amygdala | 4.7 | |
| Appendix | 4.65 | |
| AtrioventricularNode | 3.5 | |
| BDCA4+_DentriticCells | 5 | |
| Bonemarrow | 4.55 | |
| BronchialEpithelialCells | 4.5 | |
| CD105+_Endothelial | 4.6 | |
| CD14+_Monocytes | 4.85 | |
| CD19+_BCells(neg._sel.) | 4.9 | |
| CD33+_Myeloid | 5.75 | |
| CD34+ | 8.15 | |
| CD4+_Tcells | 5.6 | |
| CD56+_NKCells | 5.45 | |
| CD71+_EarlyErythroid | 4.15 | |
| CD8+_Tcells | 4.65 | |
| CardiacMyocytes | 5.5 | |
| Caudatenucleus | 4.05 | |
| Cerebellum | 3.65 | |
| CerebellumPeduncles | 5.15 | |
| CiliaryGanglion | 3.25 | |
| CingulateCortex | 4.65 | |
| Colorectaladenocarcinoma | 4.6 | |
| DorsalRootGanglion | 3.5 | |
| FetalThyroid | 5.4 | |
| Fetalbrain | 4.45 | |
| Fetalliver | 3.9 | |
| Fetallung | 3.7 | |
| GlobusPallidus | 3.35 | |
| Heart | 7.95 | |
| Hypothalamus | 4.95 | |
| Kidney | 3.7 | |
| Leukemia_chronicMyelogenousK-562 | 4.15 | |
| Leukemia_promyelocytic-HL-60 | 5.3 | |
| Leukemialymphoblastic(MOLT-4) | 3.65 | |
| Liver | 6.2 | |
| Lung | 5 | |
| Lymphnode | 3.95 | |
| Lymphoma_burkitts(Daudi) | 6.35 | |
| Lymphoma_burkitts(Raji) | 9.35 | |
| MedullaOblongata | 4.1 | |
| OccipitalLobe | 4.05 | |
| OlfactoryBulb | 3.6 | |
| Ovary | 3 | |
| Pancreas | 3.65 | |
| PancreaticIslet | 4.8 | |
| ParietalLobe | 4.8 | |
| Pituitary | 5.3 | |
| Placenta | 4.6 | |
| Pons | 4.55 | |
| PrefrontalCortex | 5.6 | |
| Prostate | 5.25 | |
| Salivarygland | 3.6 | |
| SkeletalMuscle | 5.5 | |
| Skin | 4.45 | |
| SmoothMuscle | 5.1 | |
| Spinalcord | 4.8 | |
| SubthalamicNucleus | 4.15 | |
| SuperiorCervicalGanglion | 5.6 | |
| TemporalLobe | 4.1 | |
| Testis | 3.85 | |
| TestisGermCell | 3.75 | |
| TestisIntersitial | 3.8 | |
| TestisLeydigCell | 4.4 | |
| TestisSeminiferousTubule | 3.9 | |
| Thalamus | 4.65 | |
| Thymus | 3.6 | |
| Thyroid | 7 | |
| Tongue | 4.4 | |
| Tonsil | 4.4 | |
| Trachea | 3.75 | |
| TrigeminalGanglion | 4.4 | |
| Uterus | 3.65 | |
| UterusCorpus | 4.15 | |
| WholeBlood | 4.95 | |
| Wholebrain | 3.85 | |
| colon | 4.55 | |
| pineal_day | 5.62 | |
| pineal_night | 5.52 | |
| retina | 5.475 | |
| small_intestine | 4.35 | |
- Probe name: CUST_12549_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.4 ± 0.41 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.23 ± 0.22 | |
| Basal Part of Pons | 4.24 ± 0.36 | |
| Cerebellar Cortex | 4.11 ± 0.51 | |
| Cerebellar Nuclei | 4.26 ± 0.42 | |
| Claustrum | 4.78 ± 0.69 | |
| Epithalamus | 3.85 ± 0.44 | |
| Frontal Lobe | 4.17 ± 0.46 | |
| Globus Pallidus | 4.25 ± 0.34 | |
| Hypothalamus | 4.11 ± 0.36 | |
| Insula | 4.15 ± 0.41 | |
| Limbic Lobe | 4.37 ± 0.47 | |
| Mesencephalon | 4.19 ± 0.55 | |
| Myelencephalon | 4.23 ± 0.52 | |
| Occipital Lobe | 4.26 ± 0.54 | |
| Parietal Lobe | 4.38 ± 0.52 | |
| Pontine Tegmentum | 4.29 ± 0.51 | |
| Striatum | 4.18 ± 0.46 | |
| Subthalamus | 4.15 ± 0.39 | |
| Temporal Lobe | 4.29 ± 0.46 | |
| Thalamus | 4.13 ± 0.56 | |
| White Matter | 3.99 ± 0.58 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sars2 | CB | Cerebellum | 44.38 | |
| 70.15 | | |||
| Sars2 | CTX | Cerebral cortex | 75.17 | |
| 63.63 | | |||
| Sars2 | HIP | Hippocampal region | 47.69 | |
| 66.52 | | |||
| Sars2 | HPF | Hippocampal formation | 53.31 | |
| 62.11 | | |||
| Sars2 | HY | Hypothalamus | 12.9 | |
| 11.5 | | |||
| Sars2 | LSX | Lateral septal complex | 21.37 | |
| 17.38 | | |||
| Sars2 | MB | Midbrain | 15.49 | |
| 14.72 | | |||
| Sars2 | MY | Medulla | 37.43 | |
| 43.23 | | |||
| Sars2 | OLF | Olfactory bulb | 75.85 | |
| 75.43 | | |||
| Sars2 | P | Pons | 25.32 | |
| 28.92 | | |||
| Sars2 | PAL | Pallidum | 30.03 | |
| 33.55 | | |||
| Sars2 | RHP | Retrohippocampal region | 64.01 | |
| 56.12 | | |||
| Sars2 | sAMY | Striatum-like amygdalar nuclei | 64.41 | |
| 61.76 | | |||
| Sars2 | STR | Striatum | 50.24 | |
| 41.93 | | |||
| Sars2 | STRd | Striatum dorsal region | 51.17 | |
| 41.96 | | |||
| Sars2 | STRv | Striatum ventral region | 48.95 | |
| 38.64 | | |||
| Sars2 | TH | Thalamus | 45.25 | |
| 49.41 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00063643 | 16 | 119 | 134 | ALLANQDSGEVQQDPK | Peptide Atlas |