AutismKB 2.0

Annotation Detail for C1orf27


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Basic Information Top
Gene Symbol:C1orf27 ( FLJ20505,ODR4,TTG1,odr-4 )
Gene Full Name: chromosome 1 open reading frame 27
Band: 1q31.1
Quick LinksEntrez ID:54953; OMIM: 609335; Uniprot ID:ODR4_HUMAN; ENSEMBL ID: ENSG00000157181; HGNC ID: 24299
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst1 / 6231916
fetus16 / 56401228
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult79 / 193912140
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma0 / 174750 
breast (mammary gland) tumor3 / 9417831
cervical tumor2 / 3436658
chondrosarcoma2 / 8282324
colorectal tumor3 / 11424626
esophageal tumor0 / 172900 
gastrointestinal tumor4 / 11936933
germ cell tumor5 / 26384518
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor2 / 6895929
leukemia1 / 9584210
liver tumor12 / 96359124
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia1 / 9725010
normal127 / 336030737
ovarian tumor3 / 7668239
pancreatic tumor3 / 10461628
primitive neuroectodermal tumor of the CNS5 / 12568039
prostate cancer0 / 1026800 
retinoblastoma1 / 4635621
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder2 / 2975767
blood2 / 12347816
bone3 / 7165541
bone marrow4 / 4880181
brain18 / 110098916
cervix2 / 4817141
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue6 / 21572227
esophagus0 / 202090 
eye5 / 21105423
heart3 / 8962633
intestine8 / 23447234
kidney11 / 21177751
larynx0 / 241450 
liver15 / 20774372
lung15 / 33697444
lymph0 / 442700 
lymph node4 / 9161043
mammary gland3 / 15327119
mouth1 / 6705214
muscle4 / 10771537
nerve0 / 157680 
ovary3 / 10205129
pancreas11 / 21481251
parathyroid3 / 20539146
pharynx2 / 4132848
pituitary gland0 / 165850 
placenta14 / 28082549
prostate2 / 18934510
salivary gland0 / 201550 
skin2 / 2105749
spleen2 / 5395237
stomach2 / 9661920
testis10 / 33044230
thymus3 / 8113136
thyroid0 / 474730 
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus9 / 23287838
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218721_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts39.3
Adipocyte8.9
AdrenalCortex11.15
Adrenalgland7.75
Amygdala11.2
Appendix10.1
AtrioventricularNode7.55
BDCA4+_DentriticCells19.3
Bonemarrow9.35
BronchialEpithelialCells12.65
CD105+_Endothelial9.5
CD14+_Monocytes14.75
CD19+_BCells(neg._sel.)15.2
CD33+_Myeloid19.15
CD34+29.1
CD4+_Tcells21.6
CD56+_NKCells13.45
CD71+_EarlyErythroid8.9
CD8+_Tcells24.5
CardiacMyocytes16
Caudatenucleus8.6
Cerebellum7.4
CerebellumPeduncles10.6
CiliaryGanglion7.05
CingulateCortex10.2
Colorectaladenocarcinoma11.05
DorsalRootGanglion7.6
FetalThyroid9.45
Fetalbrain8.1
Fetalliver8.25
Fetallung12.7
GlobusPallidus6.85
Heart12.35
Hypothalamus10.05
Kidney7.5
Leukemia_chronicMyelogenousK-56229.5
Leukemia_promyelocytic-HL-608.15
Leukemialymphoblastic(MOLT-4)7.95
Liver12.55
Lung9
Lymphnode8.15
Lymphoma_burkitts(Daudi)12
Lymphoma_burkitts(Raji)13.15
MedullaOblongata7.6
OccipitalLobe10.2
OlfactoryBulb7.75
Ovary7.15
Pancreas9.65
PancreaticIslet10.5
ParietalLobe9.8
Pituitary13.6
Placenta8.3
Pons9.1
PrefrontalCortex12.65
Prostate11.05
Salivarygland7.65
SkeletalMuscle12.25
Skin7.8
SmoothMuscle13.3
Spinalcord9.3
SubthalamicNucleus8.6
SuperiorCervicalGanglion12.4
TemporalLobe8.6
Testis7.9
TestisGermCell18.8
TestisIntersitial8.1
TestisLeydigCell10.05
TestisSeminiferousTubule10.15
Thalamus9.05
Thymus6.3
Thyroid26.15
Tongue9.3
Tonsil9.15
Trachea8.05
TrigeminalGanglion14.25
Uterus14.65
UterusCorpus9.4
WholeBlood11.7
Wholebrain6.5
colon8.95
pineal_day82.5
pineal_night137.84
retina10.95
small_intestine8.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P148824
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala6.64 ± 0.31
Basal Forebrain6.63 ± 0.18
Basal Part of Pons6.16 ± 0.16
Cerebellar Cortex6.56 ± 0.19
Cerebellar Nuclei6.51 ± 0.12
Claustrum6.6 ± 0.3
Epithalamus6.48 ± 0.29
Frontal Lobe6.41 ± 0.31
Globus Pallidus7.1 ± 0.26
Hypothalamus6.46 ± 0.4
Insula6.48 ± 0.21
Limbic Lobe6.53 ± 0.42
Mesencephalon6.59 ± 0.3
Myelencephalon6.5 ± 0.34
Occipital Lobe6.73 ± 0.39
Parietal Lobe6.45 ± 0.34
Pontine Tegmentum6.62 ± 0.34
Striatum6.95 ± 0.35
Subthalamus6.38 ± 0.1
Temporal Lobe6.37 ± 0.27
Thalamus6.42 ± 0.27
White Matter7.46 ± 0.19
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
BC003331CBCerebellum27.2
59.18
BC003331CTXCerebral cortex53.01
39.31
BC003331HIPHippocampal region60.64
94.68
BC003331HPFHippocampal formation57.44
74.33
BC003331HYHypothalamus14.44
11.29
BC003331LSXLateral septal complex13.94
9.57
BC003331MBMidbrain31.72
31.05
BC003331MYMedulla43.74
53.81
BC003331OLFOlfactory bulb36.88
28.27
BC003331PPons31.32
37.29
BC003331PALPallidum25.23
24.84
BC003331RHPRetrohippocampal region52.27
48.29
BC003331sAMYStriatum-like amygdalar nuclei11
8.63
BC003331STRStriatum23.74
16.81
BC003331STRdStriatum dorsal region26.69
19.03
BC003331STRvStriatum ventral region25.39
17.02
BC003331THThalamus29.26
25.87
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00096353 18 64 81 LDNLDEEWATEHACQVSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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