Annotation Detail for FAM120C


Gene Symbol: | FAM120C ( CXorf17,FLJ20506,FLJ43676,ORF34 ) |
---|---|
Gene Full Name: | family with sequence similarity 120C |
Band: | Xp11.22 |
Quick Links | Entrez ID:54954; OMIM: 300741; Uniprot ID:F120C_HUMAN; ENSEMBL ID: ENSG00000184083; HGNC ID: 16949 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.86045
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
embryoid body | 0 / 70761 | 0 | |
blastocyst | 1 / 62319 | 16 | ![]() |
fetus | 11 / 564012 | 19 | ![]() |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 1 / 55556 | 17 | ![]() |
adult | 23 / 1939121 | 11 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 1 / 17475 | 57 | ![]() |
breast (mammary gland) tumor | 1 / 94178 | 10 | ![]() |
cervical tumor | 2 / 34366 | 58 | ![]() |
chondrosarcoma | 1 / 82823 | 12 | ![]() |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 1 / 119369 | 8 | ![]() |
germ cell tumor | 1 / 263845 | 3 | ![]() |
glioma | 3 / 106883 | 28 | ![]() |
head and neck tumor | 1 / 136302 | 7 | ![]() |
kidney tumor | 1 / 68959 | 14 | ![]() |
leukemia | 0 / 95842 | 0 | |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 2 / 103127 | 19 | ![]() |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 2 / 97250 | 20 | ![]() |
normal | 47 / 3360307 | 13 | ![]() |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 2 / 102680 | 19 | ![]() |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 3 / 124949 | 24 | ![]() |
soft tissue/muscle tissue tumor | 1 / 125191 | 7 | ![]() |
uterine tumor | 1 / 90257 | 11 | ![]() |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
![]() | |||
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 2 / 29757 | 67 | ![]() |
blood | 0 / 123478 | 0 | |
bone | 2 / 71655 | 27 | ![]() |
bone marrow | 0 / 48801 | 0 | |
brain | 16 / 1100989 | 14 | ![]() |
cervix | 2 / 48171 | 41 | ![]() |
connective tissue | 2 / 149255 | 13 | ![]() |
ear | 0 / 16212 | 0 | |
embryonic tissue | 1 / 215722 | 4 | ![]() |
esophagus | 0 / 20209 | 0 | |
eye | 6 / 211054 | 28 | ![]() |
heart | 1 / 89626 | 11 | ![]() |
intestine | 0 / 234472 | 0 | |
kidney | 4 / 211777 | 18 | ![]() |
larynx | 0 / 24145 | 0 | |
liver | 1 / 207743 | 4 | ![]() |
lung | 4 / 336974 | 11 | ![]() |
lymph | 0 / 44270 | 0 | |
lymph node | 1 / 91610 | 10 | ![]() |
mammary gland | 5 / 153271 | 32 | ![]() |
mouth | 1 / 67052 | 14 | ![]() |
muscle | 3 / 107715 | 27 | ![]() |
nerve | 1 / 15768 | 63 | ![]() |
ovary | 0 / 102051 | 0 | |
pancreas | 3 / 214812 | 13 | ![]() |
parathyroid | 0 / 20539 | 0 | |
pharynx | 1 / 41328 | 24 | ![]() |
pituitary gland | 1 / 16585 | 60 | ![]() |
placenta | 2 / 280825 | 7 | ![]() |
prostate | 2 / 189345 | 10 | ![]() |
salivary gland | 0 / 20155 | 0 | |
skin | 3 / 210574 | 14 | ![]() |
spleen | 3 / 53952 | 55 | ![]() |
stomach | 1 / 96619 | 10 | ![]() |
testis | 2 / 330442 | 6 | ![]() |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 3 / 232878 | 12 | ![]() |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 220685_at
Cell line | Expression level | Expression bar |
---|---|---|
![]() | ||
721_B_lymphoblasts | 6.05 | ![]() |
Adipocyte | 4.85 | ![]() |
AdrenalCortex | 5.45 | ![]() |
Adrenalgland | 4.15 | ![]() |
Amygdala | 4.95 | ![]() |
Appendix | 5.4 | ![]() |
AtrioventricularNode | 4 | ![]() |
BDCA4+_DentriticCells | 6.5 | ![]() |
Bonemarrow | 4.85 | ![]() |
BronchialEpithelialCells | 4.85 | ![]() |
CD105+_Endothelial | 5.1 | ![]() |
CD14+_Monocytes | 5.2 | ![]() |
CD19+_BCells(neg._sel.) | 5.3 | ![]() |
CD33+_Myeloid | 6.25 | ![]() |
CD34+ | 6.55 | ![]() |
CD4+_Tcells | 5.55 | ![]() |
CD56+_NKCells | 5.8 | ![]() |
CD71+_EarlyErythroid | 4.7 | ![]() |
CD8+_Tcells | 4.8 | ![]() |
CardiacMyocytes | 6.6 | ![]() |
Caudatenucleus | 4.45 | ![]() |
Cerebellum | 4.05 | ![]() |
CerebellumPeduncles | 5.6 | ![]() |
CiliaryGanglion | 3.8 | ![]() |
CingulateCortex | 5.65 | ![]() |
Colorectaladenocarcinoma | 5.05 | ![]() |
DorsalRootGanglion | 3.9 | ![]() |
FetalThyroid | 4.8 | ![]() |
Fetalbrain | 4.95 | ![]() |
Fetalliver | 4.25 | ![]() |
Fetallung | 4.05 | ![]() |
GlobusPallidus | 3.65 | ![]() |
Heart | 6.45 | ![]() |
Hypothalamus | 5.25 | ![]() |
Kidney | 4.1 | ![]() |
Leukemia_chronicMyelogenousK-562 | 4.5 | ![]() |
Leukemia_promyelocytic-HL-60 | 4.4 | ![]() |
Leukemialymphoblastic(MOLT-4) | 4 | ![]() |
Liver | 7.85 | ![]() |
Lung | 5.5 | ![]() |
Lymphnode | 4.25 | ![]() |
Lymphoma_burkitts(Daudi) | 6.4 | ![]() |
Lymphoma_burkitts(Raji) | 8.25 | ![]() |
MedullaOblongata | 4.55 | ![]() |
OccipitalLobe | 4.5 | ![]() |
OlfactoryBulb | 4.45 | ![]() |
Ovary | 4.5 | ![]() |
Pancreas | 4 | ![]() |
PancreaticIslet | 5.7 | ![]() |
ParietalLobe | 5.35 | ![]() |
Pituitary | 5.95 | ![]() |
Placenta | 5 | ![]() |
Pons | 4.7 | ![]() |
PrefrontalCortex | 5.85 | ![]() |
Prostate | 5.8 | ![]() |
Salivarygland | 4.05 | ![]() |
SkeletalMuscle | 6.75 | ![]() |
Skin | 4 | ![]() |
SmoothMuscle | 5.65 | ![]() |
Spinalcord | 5.2 | ![]() |
SubthalamicNucleus | 4.55 | ![]() |
SuperiorCervicalGanglion | 6 | ![]() |
TemporalLobe | 4.45 | ![]() |
Testis | 4.3 | ![]() |
TestisGermCell | 4.1 | ![]() |
TestisIntersitial | 4.15 | ![]() |
TestisLeydigCell | 5.8 | ![]() |
TestisSeminiferousTubule | 5.2 | ![]() |
Thalamus | 4.95 | ![]() |
Thymus | 3.95 | ![]() |
Thyroid | 6.2 | ![]() |
Tongue | 5.1 | ![]() |
Tonsil | 4.85 | ![]() |
Trachea | 4.3 | ![]() |
TrigeminalGanglion | 5.05 | ![]() |
Uterus | 4 | ![]() |
UterusCorpus | 4.45 | ![]() |
WholeBlood | 5.45 | ![]() |
Wholebrain | 4.1 | ![]() |
colon | 4.85 | ![]() |
pineal_day | 6.06 | ![]() |
pineal_night | 5.9 | ![]() |
retina | 6.025 | ![]() |
small_intestine | 4.8 | ![]() |
- Probe name: A_32_P67623
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 9.64 ± 0.25 | ![]() ![]() ![]() |
Basal Forebrain | 9.64 ± 0.21 | ![]() ![]() ![]() |
Basal Part of Pons | 8.85 ± 0.13 | ![]() ![]() ![]() |
Cerebellar Cortex | 9.06 ± 0.08 | ![]() ![]() ![]() |
Cerebellar Nuclei | 9.22 ± 0.32 | ![]() ![]() ![]() |
Claustrum | 9.51 ± 0.21 | ![]() ![]() ![]() |
Epithalamus | 9.53 ± 0.38 | ![]() ![]() ![]() |
Frontal Lobe | 9.26 ± 0.3 | ![]() ![]() ![]() |
Globus Pallidus | 9.96 ± 0.2 | ![]() ![]() ![]() |
Hypothalamus | 9.62 ± 0.24 | ![]() ![]() ![]() |
Insula | 9.35 ± 0.21 | ![]() ![]() ![]() |
Limbic Lobe | 9.3 ± 0.29 | ![]() ![]() ![]() |
Mesencephalon | 9.46 ± 0.33 | ![]() ![]() ![]() |
Myelencephalon | 9.37 ± 0.37 | ![]() ![]() ![]() |
Occipital Lobe | 9.15 ± 0.27 | ![]() ![]() ![]() |
Parietal Lobe | 9.28 ± 0.25 | ![]() ![]() ![]() |
Pontine Tegmentum | 9.44 ± 0.19 | ![]() ![]() ![]() |
Striatum | 10 ± 0.23 | ![]() ![]() ![]() |
Subthalamus | 9.14 ± 0.44 | ![]() ![]() ![]() |
Temporal Lobe | 9.27 ± 0.25 | ![]() ![]() ![]() |
Thalamus | 9.24 ± 0.25 | ![]() ![]() ![]() |
White Matter | 10.36 ± 0.19 | ![]() ![]() ![]() |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
ORF34 | CB | Cerebellum | 13.32 | ![]() |
15.71 | ![]() | |||
ORF34 | CTX | Cerebral cortex | 15.31 | ![]() |
11.66 | ![]() | |||
ORF34 | HIP | Hippocampal region | 21.14 | ![]() |
25.76 | ![]() | |||
ORF34 | HPF | Hippocampal formation | 18.27 | ![]() |
19.39 | ![]() | |||
ORF34 | HY | Hypothalamus | 6.59 | ![]() |
5.54 | ![]() | |||
ORF34 | LSX | Lateral septal complex | 7.47 | ![]() |
6.07 | ![]() | |||
ORF34 | MB | Midbrain | 2.45 | ![]() |
2.36 | ![]() | |||
ORF34 | MY | Medulla | 5.2 | ![]() |
5.35 | ![]() | |||
ORF34 | OLF | Olfactory bulb | 24.97 | ![]() |
20.37 | ![]() | |||
ORF34 | P | Pons | 3.55 | ![]() |
3.83 | ![]() | |||
ORF34 | PAL | Pallidum | 2.16 | ![]() |
2.1 | ![]() | |||
ORF34 | RHP | Retrohippocampal region | 14.44 | ![]() |
12.2 | ![]() | |||
ORF34 | sAMY | Striatum-like amygdalar nuclei | 8.94 | ![]() |
6.57 | ![]() | |||
ORF34 | STR | Striatum | 5.99 | ![]() |
4.8 | ![]() | |||
ORF34 | STRd | Striatum dorsal region | 3.07 | ![]() |
2.47 | ![]() | |||
ORF34 | STRv | Striatum ventral region | 13.45 | ![]() |
10.31 | ![]() | |||
ORF34 | TH | Thalamus | 7.25 | ![]() |
6.27 | ![]() |
Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
---|---|---|---|---|---|
F120C_HUMAN_2 | 12 | 2 | 13 | GVQGFQEFLEKR | PRIDE |
PAp00024099 | 14 | 346 | 359 | AHQLVLPPCDVVIK | Peptide Atlas |