AutismKB 2.0

Annotation Detail for FAM120C


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Basic Information Top
Gene Symbol:FAM120C ( CXorf17,FLJ20506,FLJ43676,ORF34 )
Gene Full Name: family with sequence similarity 120C
Band: Xp11.22
Quick LinksEntrez ID:54954; OMIM: 300741; Uniprot ID:F120C_HUMAN; ENSEMBL ID: ENSG00000184083; HGNC ID: 16949
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst1 / 6231916
fetus11 / 56401219
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult23 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor2 / 3436658
chondrosarcoma1 / 8282312
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor1 / 2638453
glioma3 / 10688328
head and neck tumor1 / 1363027
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal47 / 336030713
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor1 / 1251917
uterine tumor1 / 9025711
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder2 / 2975767
blood0 / 1234780 
bone2 / 7165527
bone marrow0 / 488010 
brain16 / 110098914
cervix2 / 4817141
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye6 / 21105428
heart1 / 8962611
intestine0 / 2344720 
kidney4 / 21177718
larynx0 / 241450 
liver1 / 2077434
lung4 / 33697411
lymph0 / 442700 
lymph node1 / 9161010
mammary gland5 / 15327132
mouth1 / 6705214
muscle3 / 10771527
nerve1 / 1576863
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta2 / 2808257
prostate2 / 18934510
salivary gland0 / 201550 
skin3 / 21057414
spleen3 / 5395255
stomach1 / 9661910
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 220685_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.05
Adipocyte4.85
AdrenalCortex5.45
Adrenalgland4.15
Amygdala4.95
Appendix5.4
AtrioventricularNode4
BDCA4+_DentriticCells6.5
Bonemarrow4.85
BronchialEpithelialCells4.85
CD105+_Endothelial5.1
CD14+_Monocytes5.2
CD19+_BCells(neg._sel.)5.3
CD33+_Myeloid6.25
CD34+6.55
CD4+_Tcells5.55
CD56+_NKCells5.8
CD71+_EarlyErythroid4.7
CD8+_Tcells4.8
CardiacMyocytes6.6
Caudatenucleus4.45
Cerebellum4.05
CerebellumPeduncles5.6
CiliaryGanglion3.8
CingulateCortex5.65
Colorectaladenocarcinoma5.05
DorsalRootGanglion3.9
FetalThyroid4.8
Fetalbrain4.95
Fetalliver4.25
Fetallung4.05
GlobusPallidus3.65
Heart6.45
Hypothalamus5.25
Kidney4.1
Leukemia_chronicMyelogenousK-5624.5
Leukemia_promyelocytic-HL-604.4
Leukemialymphoblastic(MOLT-4)4
Liver7.85
Lung5.5
Lymphnode4.25
Lymphoma_burkitts(Daudi)6.4
Lymphoma_burkitts(Raji)8.25
MedullaOblongata4.55
OccipitalLobe4.5
OlfactoryBulb4.45
Ovary4.5
Pancreas4
PancreaticIslet5.7
ParietalLobe5.35
Pituitary5.95
Placenta5
Pons4.7
PrefrontalCortex5.85
Prostate5.8
Salivarygland4.05
SkeletalMuscle6.75
Skin4
SmoothMuscle5.65
Spinalcord5.2
SubthalamicNucleus4.55
SuperiorCervicalGanglion6
TemporalLobe4.45
Testis4.3
TestisGermCell4.1
TestisIntersitial4.15
TestisLeydigCell5.8
TestisSeminiferousTubule5.2
Thalamus4.95
Thymus3.95
Thyroid6.2
Tongue5.1
Tonsil4.85
Trachea4.3
TrigeminalGanglion5.05
Uterus4
UterusCorpus4.45
WholeBlood5.45
Wholebrain4.1
colon4.85
pineal_day6.06
pineal_night5.9
retina6.025
small_intestine4.8
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_32_P67623
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.64 ± 0.25
Basal Forebrain9.64 ± 0.21
Basal Part of Pons8.85 ± 0.13
Cerebellar Cortex9.06 ± 0.08
Cerebellar Nuclei9.22 ± 0.32
Claustrum9.51 ± 0.21
Epithalamus9.53 ± 0.38
Frontal Lobe9.26 ± 0.3
Globus Pallidus9.96 ± 0.2
Hypothalamus9.62 ± 0.24
Insula9.35 ± 0.21
Limbic Lobe9.3 ± 0.29
Mesencephalon9.46 ± 0.33
Myelencephalon9.37 ± 0.37
Occipital Lobe9.15 ± 0.27
Parietal Lobe9.28 ± 0.25
Pontine Tegmentum9.44 ± 0.19
Striatum10 ± 0.23
Subthalamus9.14 ± 0.44
Temporal Lobe9.27 ± 0.25
Thalamus9.24 ± 0.25
White Matter10.36 ± 0.19
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
ORF34CBCerebellum13.32
15.71
ORF34CTXCerebral cortex15.31
11.66
ORF34HIPHippocampal region21.14
25.76
ORF34HPFHippocampal formation18.27
19.39
ORF34HYHypothalamus6.59
5.54
ORF34LSXLateral septal complex7.47
6.07
ORF34MBMidbrain2.45
2.36
ORF34MYMedulla5.2
5.35
ORF34OLFOlfactory bulb24.97
20.37
ORF34PPons3.55
3.83
ORF34PALPallidum2.16
2.1
ORF34RHPRetrohippocampal region14.44
12.2
ORF34sAMYStriatum-like amygdalar nuclei8.94
6.57
ORF34STRStriatum5.99
4.8
ORF34STRdStriatum dorsal region3.07
2.47
ORF34STRvStriatum ventral region13.45
10.31
ORF34THThalamus7.25
6.27
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
F120C_HUMAN_2 12 2 13 GVQGFQEFLEKR PRIDE
PAp00024099 14 346 359 AHQLVLPPCDVVIK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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