Annotation Detail for PARP16
Basic Information Top
| Gene Symbol: | PARP16 ( C15orf30,FLJ20509,FLJ25281,pART15 ) |
|---|---|
| Gene Full Name: | poly (ADP-ribose) polymerase family, member 16 |
| Band: | 15q22.31 |
| Quick Links | Entrez ID:54956; OMIM: NA; Uniprot ID:PAR16_HUMAN; ENSEMBL ID: ENSG00000138617; HGNC ID: 26040 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.30634
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 31 / 564012 | 54 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 38 / 1939121 | 19 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 |  |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 86 / 3360307 | 25 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 0 / 29757 | 0 | |
| blood | 5 / 123478 | 40 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 23 / 1100989 | 20 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 2 / 89626 | 22 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 6 / 91610 | 65 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 4 / 96619 | 41 | |
| testis | 7 / 330442 | 21 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 1 / 51780 | 19 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 219034_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 5.95 | |
| Adipocyte | 4.65 | |
| AdrenalCortex | 5.35 | |
| Adrenalgland | 4 | |
| Amygdala | 4.85 | |
| Appendix | 5.8 | |
| AtrioventricularNode | 6.35 | |
| BDCA4+_DentriticCells | 5.1 | |
| Bonemarrow | 5.05 | |
| BronchialEpithelialCells | 4.45 | |
| CD105+_Endothelial | 6.05 | |
| CD14+_Monocytes | 5 | |
| CD19+_BCells(neg._sel.) | 5.4 | |
| CD33+_Myeloid | 6.05 | |
| CD34+ | 6.45 | |
| CD4+_Tcells | 6.5 | |
| CD56+_NKCells | 5.9 | |
| CD71+_EarlyErythroid | 4.65 | |
| CD8+_Tcells | 5.8 | |
| CardiacMyocytes | 5.75 | |
| Caudatenucleus | 4.2 | |
| Cerebellum | 3.85 | |
| CerebellumPeduncles | 5.25 | |
| CiliaryGanglion | 4.65 | |
| CingulateCortex | 4.85 | |
| Colorectaladenocarcinoma | 4.75 | |
| DorsalRootGanglion | 5.1 | |
| FetalThyroid | 4.6 | |
| Fetalbrain | 4.75 | |
| Fetalliver | 4.25 | |
| Fetallung | 3.9 | |
| GlobusPallidus | 3.45 | |
| Heart | 5.8 | |
| Hypothalamus | 5.05 | |
| Kidney | 3.75 | |
| Leukemia_chronicMyelogenousK-562 | 4.3 | |
| Leukemia_promyelocytic-HL-60 | 4.15 | |
| Leukemialymphoblastic(MOLT-4) | 4.85 | |
| Liver | 6.1 | |
| Lung | 5.25 | |
| Lymphnode | 4.3 | |
| Lymphoma_burkitts(Daudi) | 6.1 | |
| Lymphoma_burkitts(Raji) | 5.95 | |
| MedullaOblongata | 4.35 | |
| OccipitalLobe | 4.25 | |
| OlfactoryBulb | 3.7 | |
| Ovary | 3.2 | |
| Pancreas | 3.8 | |
| PancreaticIslet | 5.05 | |
| ParietalLobe | 4.9 | |
| Pituitary | 5.6 | |
| Placenta | 4.8 | |
| Pons | 4.5 | |
| PrefrontalCortex | 5.8 | |
| Prostate | 5.6 | |
| Salivarygland | 4.55 | |
| SkeletalMuscle | 5.65 | |
| Skin | 5.6 | |
| SmoothMuscle | 5.3 | |
| Spinalcord | 5.2 | |
| SubthalamicNucleus | 4.65 | |
| SuperiorCervicalGanglion | 5.95 | |
| TemporalLobe | 4.3 | |
| Testis | 4.5 | |
| TestisGermCell | 4 | |
| TestisIntersitial | 4 | |
| TestisLeydigCell | 4.7 | |
| TestisSeminiferousTubule | 4.1 | |
| Thalamus | 4.8 | |
| Thymus | 3.8 | |
| Thyroid | 5.85 | |
| Tongue | 4.6 | |
| Tonsil | 4.55 | |
| Trachea | 3.95 | |
| TrigeminalGanglion | 4.95 | |
| Uterus | 3.9 | |
| UterusCorpus | 4.15 | |
| WholeBlood | 5.2 | |
| Wholebrain | 3.85 | |
| colon | 4.75 | |
| pineal_day | 5.8 | |
| pineal_night | 5.72 | |
| retina | 5.975 | |
| small_intestine | 4.6 | |
- Probe name: CUST_8118_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.07 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.99 ± 0.29 | |
| Basal Part of Pons | 2.44 ± 0.69 | |
| Cerebellar Cortex | 2.98 ± 0.49 | |
| Cerebellar Nuclei | 2.72 ± 0.59 | |
| Claustrum | 3.31 ± 0.73 | |
| Epithalamus | 2.69 ± 0.87 | |
| Frontal Lobe | 2.54 ± 0.79 | |
| Globus Pallidus | 3.13 ± 0.72 | |
| Hypothalamus | 2.52 ± 0.65 | |
| Insula | 2.74 ± 0.72 | |
| Limbic Lobe | 2.8 ± 0.71 | |
| Mesencephalon | 2.93 ± 0.79 | |
| Myelencephalon | 2.76 ± 0.74 | |
| Occipital Lobe | 2.78 ± 0.75 | |
| Parietal Lobe | 2.7 ± 0.71 | |
| Pontine Tegmentum | 2.73 ± 0.71 | |
| Striatum | 2.75 ± 0.98 | |
| Subthalamus | 2.68 ± 0.61 | |
| Temporal Lobe | 2.72 ± 0.75 | |
| Thalamus | 2.67 ± 0.7 | |
| White Matter | 2.89 ± 0.8 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Parp16 | CB | Cerebellum | 0.76 | |
| 0.92 | | |||
| Parp16 | CTX | Cerebral cortex | 0.57 | |
| 0.5 | | |||
| Parp16 | HIP | Hippocampal region | 0.79 | |
| 0.84 | | |||
| Parp16 | HPF | Hippocampal formation | 0.61 | |
| 0.59 | | |||
| Parp16 | HY | Hypothalamus | 0.05 | |
| 0.05 | | |||
| Parp16 | LSX | Lateral septal complex | 0.05 | |
| 0 | | |||
| Parp16 | MB | Midbrain | 0.7 | |
| 0.65 | | |||
| Parp16 | MY | Medulla | 5.18 | |
| 6.52 | | |||
| Parp16 | OLF | Olfactory bulb | 1.41 | |
| 1.17 | | |||
| Parp16 | P | Pons | 1.2 | |
| 1.23 | | |||
| Parp16 | PAL | Pallidum | 0.47 | |
| 0.42 | | |||
| Parp16 | RHP | Retrohippocampal region | 0.29 | |
| 0.19 | | |||
| Parp16 | sAMY | Striatum-like amygdalar nuclei | 0.45 | |
| 0.27 | | |||
| Parp16 | STR | Striatum | 0.4 | |
| 0.41 | | |||
| Parp16 | STRd | Striatum dorsal region | 0.42 | |
| 0.53 | | |||
| Parp16 | STRv | Striatum ventral region | 0.39 | |
| 0.22 | | |||
| Parp16 | TH | Thalamus | 0.61 | |
| 0.71 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00041676 | 27 | 111 | 137 | LTGAPHTPVPAPDFLFEIEYFDPANAK | Peptide Atlas |