AutismKB 2.0

Annotation Detail for SSH3


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Basic Information Top
Gene Symbol:SSH3 ( FLJ10928,FLJ20515,FLJ42240,SSH3L )
Gene Full Name: slingshot homolog 3 (Drosophila)
Band: 11q13.2
Quick LinksEntrez ID:54961; OMIM: 606780; Uniprot ID:SSH3_HUMAN; ENSEMBL ID: ENSG00000172830; HGNC ID: 30581
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst2 / 6231932
fetus4 / 5640127
neonate0 / 310970 
infant0 / 236200 
juvenile1 / 5555617
adult85 / 193912143
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor9 / 9417895
cervical tumor1 / 3436629
chondrosarcoma5 / 8282360
colorectal tumor6 / 11424652
esophageal tumor1 / 1729057
gastrointestinal tumor3 / 11936925
germ cell tumor17 / 26384564
glioma9 / 10688384
head and neck tumor9 / 13630266
kidney tumor11 / 68959159
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal104 / 336030730
ovarian tumor8 / 76682104
pancreatic tumor12 / 104616114
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer5 / 10268048
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor3 / 12519123
uterine tumor3 / 9025733
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone2 / 7165527
bone marrow0 / 488010 
brain36 / 110098932
cervix1 / 4817120
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue2 / 2157229
esophagus1 / 2020949
eye12 / 21105456
heart1 / 8962611
intestine15 / 23447263
kidney16 / 21177775
larynx0 / 241450 
liver2 / 2077439
lung6 / 33697417
lymph0 / 442700 
lymph node2 / 9161021
mammary gland10 / 15327165
mouth9 / 67052134
muscle1 / 1077159
nerve1 / 1576863
ovary12 / 102051117
pancreas13 / 21481260
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta13 / 28082546
prostate19 / 189345100
salivary gland1 / 2015549
skin5 / 21057423
spleen6 / 53952111
stomach3 / 9661931
testis7 / 33044221
thymus4 / 8113149
thyroid1 / 4747321
tonsil0 / 169990 
trachea3 / 5241357
umbilical cord0 / 136800 
uterus10 / 23287842
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 51192_at
Cell line Expression level Expression bar
721_B_lymphoblasts9
Adipocyte7.35
AdrenalCortex7.4
Adrenalgland8.85
Amygdala7.85
Appendix7.85
AtrioventricularNode7.1
BDCA4+_DentriticCells8.35
Bonemarrow7.55
BronchialEpithelialCells43
CD105+_Endothelial8.15
CD14+_Monocytes8
CD19+_BCells(neg._sel.)6.7
CD33+_Myeloid17.75
CD34+26.7
CD4+_Tcells8.75
CD56+_NKCells20.95
CD71+_EarlyErythroid6.85
CD8+_Tcells8.1
CardiacMyocytes9.1
Caudatenucleus6.65
Cerebellum8.15
CerebellumPeduncles10.6
CiliaryGanglion6.15
CingulateCortex7.65
Colorectaladenocarcinoma13.65
DorsalRootGanglion5.6
FetalThyroid10.25
Fetalbrain7.4
Fetalliver6.35
Fetallung6.4
GlobusPallidus9.3
Heart11.85
Hypothalamus9.4
Kidney7.15
Leukemia_chronicMyelogenousK-5626.7
Leukemia_promyelocytic-HL-605.4
Leukemialymphoblastic(MOLT-4)5.95
Liver10
Lung11.5
Lymphnode6.55
Lymphoma_burkitts(Daudi)9.4
Lymphoma_burkitts(Raji)9
MedullaOblongata6.75
OccipitalLobe6.7
OlfactoryBulb7.1
Ovary4.95
Pancreas5.95
PancreaticIslet7.95
ParietalLobe7.7
Pituitary8.25
Placenta38.8
Pons6.95
PrefrontalCortex9.65
Prostate48.35
Salivarygland6.25
SkeletalMuscle8.45
Skin6.25
SmoothMuscle8.65
Spinalcord12.7
SubthalamicNucleus6.7
SuperiorCervicalGanglion7.9
TemporalLobe6.7
Testis6.45
TestisGermCell6.2
TestisIntersitial6.1
TestisLeydigCell7.2
TestisSeminiferousTubule6.4
Thalamus7.6
Thymus6
Thyroid12.45
Tongue19.55
Tonsil7.15
Trachea8.2
TrigeminalGanglion7
Uterus6.15
UterusCorpus6.4
WholeBlood8.8
Wholebrain6.6
colon7.55
pineal_day9.44
pineal_night9.26
retina11.05
small_intestine7.2
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P150147
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.35 ± 1.02
Basal Forebrain3.08 ± 0.51
Basal Part of Pons3.34 ± 0.78
Cerebellar Cortex3.66 ± 0.44
Cerebellar Nuclei3.06 ± 0.8
Claustrum3.45 ± 0.85
Epithalamus3.2 ± 0.77
Frontal Lobe2.95 ± 0.73
Globus Pallidus3.69 ± 0.54
Hypothalamus3.16 ± 0.52
Insula2.67 ± 0.62
Limbic Lobe2.75 ± 0.76
Mesencephalon3.24 ± 0.77
Myelencephalon3.22 ± 0.57
Occipital Lobe3.17 ± 0.58
Parietal Lobe3.3 ± 0.76
Pontine Tegmentum2.87 ± 0.68
Striatum2.72 ± 0.71
Subthalamus3.36 ± 0.52
Temporal Lobe2.95 ± 0.71
Thalamus3.23 ± 0.66
White Matter4.62 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ssh3CBCerebellum29.42
29.86
Ssh3CTXCerebral cortex100
100
Ssh3HIPHippocampal region75.87
100
Ssh3HPFHippocampal formation99.91
100
Ssh3HYHypothalamus100
100
Ssh3LSXLateral septal complex100
91.73
Ssh3MBMidbrain87.12
78.98
Ssh3MYMedulla47.8
54.03
Ssh3OLFOlfactory bulb73.36
63.44
Ssh3PPons66.19
69.67
Ssh3PALPallidum87.64
77.57
Ssh3RHPRetrohippocampal region100
100
Ssh3sAMYStriatum-like amygdalar nuclei100
100
Ssh3STRStriatum59.66
45.46
Ssh3STRdStriatum dorsal region34.46
25.24
Ssh3STRvStriatum ventral region70.47
47.97
Ssh3THThalamus92.56
71.93
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00095403 11 404 414 AQGTHVLVHCK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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