AutismKB 2.0

Annotation Detail for FAM118A


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Basic Information Top
Gene Symbol:FAM118A ( C22orf8,FLJ20635 )
Gene Full Name: family with sequence similarity 118, member A
Band: 22q13.31
Quick LinksEntrez ID:55007; OMIM: NA; Uniprot ID:F118A_HUMAN; ENSEMBL ID: ENSG00000100376; HGNC ID: 1313
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body6 / 7076184
blastocyst1 / 6231916
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult66 / 193912134
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma1 / 1747557
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor7 / 11424661
esophageal tumor0 / 172900 
gastrointestinal tumor8 / 11936967
germ cell tumor4 / 26384515
glioma1 / 1068839
head and neck tumor4 / 13630229
kidney tumor2 / 6895929
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma1 / 7175513
non-neoplasia3 / 9725030
normal108 / 336030732
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer1 / 1026809
retinoblastoma0 / 463560 
skin tumor3 / 12494924
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue1 / 1310676
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood1 / 1234788
bone3 / 7165541
bone marrow0 / 488010 
brain21 / 110098919
cervix1 / 4817120
connective tissue1 / 1492556
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus0 / 202090 
eye3 / 21105414
heart3 / 8962633
intestine18 / 23447276
kidney3 / 21177714
larynx0 / 241450 
liver2 / 2077439
lung6 / 33697417
lymph0 / 442700 
lymph node2 / 9161021
mammary gland5 / 15327132
mouth1 / 6705214
muscle3 / 10771527
nerve0 / 157680 
ovary1 / 1020519
pancreas4 / 21481218
parathyroid3 / 20539146
pharynx2 / 4132848
pituitary gland4 / 16585241
placenta5 / 28082517
prostate6 / 18934531
salivary gland1 / 2015549
skin3 / 21057414
spleen1 / 5395218
stomach8 / 9661982
testis21 / 33044263
thymus5 / 8113161
thyroid2 / 4747342
tonsil1 / 1699958
trachea1 / 5241319
umbilical cord0 / 136800 
uterus3 / 23287812
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 219629_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.25
Adipocyte3.5
AdrenalCortex3.55
Adrenalgland2.9
Amygdala3.55
Appendix3.5
AtrioventricularNode2.6
BDCA4+_DentriticCells6.3
Bonemarrow3.4
BronchialEpithelialCells3.4
CD105+_Endothelial65.25
CD14+_Monocytes4.3
CD19+_BCells(neg._sel.)6.7
CD33+_Myeloid272.35
CD34+30.6
CD4+_Tcells18.15
CD56+_NKCells5.2
CD71+_EarlyErythroid9.85
CD8+_Tcells28.15
CardiacMyocytes4.35
Caudatenucleus3.05
Cerebellum2.8
CerebellumPeduncles3.95
CiliaryGanglion2.5
CingulateCortex3.5
Colorectaladenocarcinoma3.45
DorsalRootGanglion2.65
FetalThyroid3.35
Fetalbrain3.65
Fetalliver2.95
Fetallung2.95
GlobusPallidus2.55
Heart4.3
Hypothalamus3.8
Kidney2.75
Leukemia_chronicMyelogenousK-5623.85
Leukemia_promyelocytic-HL-603.05
Leukemialymphoblastic(MOLT-4)2.8
Liver4.5
Lung3.8
Lymphnode6.7
Lymphoma_burkitts(Daudi)9.25
Lymphoma_burkitts(Raji)4.8
MedullaOblongata3.2
OccipitalLobe3.1
OlfactoryBulb2.75
Ovary2.25
Pancreas2.75
PancreaticIslet3.7
ParietalLobe3.65
Pituitary6.4
Placenta3.5
Pons3.5
PrefrontalCortex4.3
Prostate4.65
Salivarygland2.95
SkeletalMuscle4.3
Skin2.65
SmoothMuscle3.9
Spinalcord3.65
SubthalamicNucleus3.2
SuperiorCervicalGanglion3.9
TemporalLobe3.35
Testis7.1
TestisGermCell7.2
TestisIntersitial3.6
TestisLeydigCell5.55
TestisSeminiferousTubule12.85
Thalamus3.5
Thymus2.75
Thyroid4.35
Tongue3.35
Tonsil3.65
Trachea2.9
TrigeminalGanglion5.5
Uterus2.85
UterusCorpus3.15
WholeBlood4.2
Wholebrain2.95
colon3.5
pineal_day4.28
pineal_night4.12
retina4.6
small_intestine3.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P120973
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.26 ± 0.39
Basal Forebrain4.95 ± 0.37
Basal Part of Pons4.87 ± 0.27
Cerebellar Cortex5.18 ± 0.26
Cerebellar Nuclei5.05 ± 0.37
Claustrum4.88 ± 0.5
Epithalamus5.39 ± 0.51
Frontal Lobe4.87 ± 0.41
Globus Pallidus4.91 ± 0.61
Hypothalamus4.84 ± 0.56
Insula4.94 ± 0.34
Limbic Lobe5.15 ± 0.42
Mesencephalon4.98 ± 0.44
Myelencephalon5 ± 0.47
Occipital Lobe5.15 ± 0.44
Parietal Lobe4.89 ± 0.43
Pontine Tegmentum5 ± 0.56
Striatum5.57 ± 0.44
Subthalamus4.78 ± 0.26
Temporal Lobe4.93 ± 0.4
Thalamus4.62 ± 0.39
White Matter5.03 ± 0.31
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
3110048E14RikCBCerebellum8.6
9.65
3110048E14RikCTXCerebral cortex8.04
6.04
3110048E14RikHIPHippocampal region18.67
18.78
3110048E14RikHPFHippocampal formation15.99
14.86
3110048E14RikHYHypothalamus4.69
3.72
3110048E14RikLSXLateral septal complex6.37
4.3
3110048E14RikMBMidbrain4.44
3.92
3110048E14RikMYMedulla4.65
4.68
3110048E14RikOLFOlfactory bulb9.99
7.57
3110048E14RikPPons6.02
5.85
3110048E14RikPALPallidum5.54
5.58
3110048E14RikRHPRetrohippocampal region11.38
9.1
3110048E14RiksAMYStriatum-like amygdalar nuclei3.92
3.02
3110048E14RikSTRStriatum4.28
3.26
3110048E14RikSTRdStriatum dorsal region4.57
3.55
3110048E14RikSTRvStriatum ventral region2.94
2.33
3110048E14RikTHThalamus7.41
5.9
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00079961 16 317 332 VDSTTLLGNACQDCAK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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